Revision b574878c983651e9231d1251ee7cb1edc0762e0f authored by hariszaf on 06 August 2020, 12:41:15 UTC, committed by GitHub on 06 August 2020, 12:41:15 UTC
* Create setup_hz.py

* Create bindings_hz.cpp

* Create volestipy_hz.pyx

* Create bindings_hz.h

* Update bindings_hz.h

* Update bindings_hz.cpp

* Create volestipy_old.pyx

* Delete volestipy_hz.pyx

* Create bindings_old.cpp

* Delete bindings_hz.cpp

* Update bindings.cpp

* Create bindings_old.h

* Delete bindings_hz.h

* Create setup_old.py

* Delete setup_hz.py

* Update setup.py

* Update volestipy.pyx

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.h

* Update setup.py

* Update setup_old.py

* Update bindings.cpp

* Update setup.py

* Update setup.py

* Update volestipy.pyx

* Update test1.py

* Create test1_old.py

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update bindings.cpp

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Create .gitignore

* Delete test1_old.py

* Delete setup_old.py

* Delete bindings_old.h

* Delete bindings_old.cpp

* Delete volestipy_old.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update .gitignore

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update test2.py

* Update bindings.h

* Update setup.py

* Update credits.md

* on .gitignore: files on test/Testing/Temporary/ were removed from the .gitignore file

* first attempt - not working - for rounding

* rounding function: does not work; trying to figure it out

* round_val now works; still new_A and new_b need to be included

* Create metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update volestipy.pyx

* Update bindings.cpp

* Create test_rounding.py

* Create test1.py

* Create test2.py

* Delete test2.py

* Update test1.py

* Create metabolic_net_pipeline-checkpoint.ipynb

* Update setup.py

* Update .gitignore

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.cpp

* Update test1.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Create test_rounding.py

* Delete test1.py

* Update test_rounding.py

* Update test1.py

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.cpp

print all dimensions of the variables included in cpp

* Update volestipy.pyx

print all dimensions of the variables included in cython

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update test_rounding.py

* Update bindings.cpp

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

correct the dimensions of the shift and the T_matrix; that was the cause of the strange memory errors we used to get (e.g free(): invalid pointer , Fatal Python error: GC object already tracked etc)

* Delete test_rounding.py

* Update test_rounding.py

* Update setup.py

* Update bindings.h

* Update bindings.cpp

remove print lines for checking dimensions

* Update volestipy.pyx

remove print lines for checking dimensions

* Update bindings.h

* Update bindings.cpp

better variable names

* Update volestipy.pyx

better variable names

* Update .gitignore

* Update test_rounding.py

* Update .gitignore

add .ipynb to the .gitignore of the branch

* Update .gitignore

* Update .gitignore

* Update .gitignore

* Delete metabolic_net_pipeline.ipynb

* Update bindings.cpp

change variables names

* Update bindings.cpp

change variable names - correct

* Delete metabolic_net_pipeline-checkpoint.ipynb

remove jupyter hidden directory

* Delete test1.py

* Delete test2.py

* Create test_compute_volume.py

test script for the compute_volume() function

* Create test_random_sampling.py

test script for the random_sampling() function

* Update test_rounding.py

test script for the rounding() function
1 parent dae7b62
History
File Mode Size
CMakeLists.txt -rw-r--r-- 9.7 KB
VpolyCG_test.cpp -rw-r--r-- 4.5 KB
VpolyVol_test.cpp -rw-r--r-- 4.0 KB
ZonotopeVolCG_test.cpp -rw-r--r-- 3.1 KB
ZonotopeVol_test.cpp -rw-r--r-- 2.7 KB
benchmarks_cb.cpp -rw-r--r-- 9.6 KB
benchmarks_cg.cpp -rw-r--r-- 8.3 KB
benchmarks_sob.cpp -rw-r--r-- 9.0 KB
boundary_oracles_test.cpp -rwxr-xr-x 6.5 KB
chebychev_test.cpp -rw-r--r-- 7.7 KB
cooling_bodies_bill_test.cpp -rw-r--r-- 9.1 KB
doctest.h -rw-r--r-- 244.6 KB
generator.cpp -rw-r--r-- 11.1 KB
mcmc_diagnostics_test.cpp -rw-r--r-- 3.9 KB
new_rounding_test.cpp -rw-r--r-- 3.8 KB
new_volume_example.cpp -rw-r--r-- 20.9 KB
ode_solvers_test.cpp -rw-r--r-- 12.5 KB
root_finders_test.cpp -rw-r--r-- 1.7 KB
rounding_test.cpp -rw-r--r-- 4.8 KB
sample_simplex_main.cpp -rw-r--r-- 5.6 KB
test_main.cpp -rw-r--r-- 385 bytes
test_sdpa_format.cpp -rwxr-xr-x 3.0 KB
vol.cpp -rw-r--r-- 29.1 KB
volumeCG_test.cpp -rw-r--r-- 7.0 KB
volume_cb_hpolytope.cpp -rw-r--r-- 9.0 KB
volume_cb_vpoly_intersection_vpoly.cpp -rw-r--r-- 3.7 KB
volume_cb_vpolytope.cpp -rw-r--r-- 6.2 KB
volume_cb_zonotopes.cpp -rw-r--r-- 5.0 KB
volume_cg_hpolytope.cpp -rw-r--r-- 8.5 KB
volume_cg_vpolytope.cpp -rw-r--r-- 5.9 KB
volume_example.cpp -rw-r--r-- 2.6 KB
volume_sob_hpolytope.cpp -rw-r--r-- 9.4 KB
volume_sob_vpolytope.cpp -rw-r--r-- 4.1 KB
volume_test.cpp -rw-r--r-- 7.7 KB

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