https://github.com/RadioAstronomySoftwareGroup/pyuvdata
Revision b95b71b5ef23f746f3fc9d3ea8d41303974ae917 authored by Matthew Kolopanis on 13 May 2019, 20:06:28 UTC, committed by Bryna Hazelton on 22 May 2019, 18:57:04 UTC
1 parent 2c9b149
Tip revision: b95b71b5ef23f746f3fc9d3ea8d41303974ae917 authored by Matthew Kolopanis on 13 May 2019, 20:06:28 UTC
uvbase nose --> pytest
uvbase nose --> pytest
Tip revision: b95b71b
pyuvdata_inspect.py
#!/usr/bin/env python
# -*- mode: python; coding: utf-8 -*
# Copyright (c) 2018 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License
from __future__ import absolute_import, division, print_function
import argparse
from pyuvdata import UVData, UVBeam, UVCal
import os
# setup argparse
a = argparse.ArgumentParser(description=("Inspect attributes of pyuvdata objects.\n"
"Example: pyuvdata_inspect.py -a=ant_array.shape,"
"Ntimes zen.xx.HH.omni.calfits zen.yy.HH.uvc"),
formatter_class=argparse.RawDescriptionHelpFormatter)
a.add_argument("-a", "--attrs", dest="attrs", type=str, default='',
help="attribute(s) of object to print. Ex: ant_array.shape,Ntimes")
a.add_argument("-v", "--verbose", action='store_true', default=False,
help="Send feedback to stdout.")
a.add_argument("-i", "--interactive", action='store_true', default=False,
help="Exit into a python interpretor with objects in memory as 'uv'.")
a.add_argument("files", metavar="files", type=str, nargs='*', default=[],
help="pyuvdata object files to run on")
# parse arguments
args = a.parse_args()
# check for empty attributes
if len(args.attrs) == 0 and args.interactive is False:
raise Exception("no attributes fed...")
if len(args.files) == 0:
raise Exception("no files fed...")
# pack data objects, their names, and read functions
objs = [UVData, UVCal, UVBeam]
ob_names = ['UVData', 'UVCal', 'UVBeam']
ob_reads = [['read', 'read_miriad', 'read_fhd', 'read_ms', 'read_uvfits', 'read_uvh5'],
['read_calfits', 'read_fhd_cal'],
['read_beamfits', 'read_cst_beam']]
# iterate through files
Nfiles = len(args.files)
uv = []
exit_clean = True
for i, f in enumerate(args.files):
# check file exists
if os.path.exists(f) is False:
print("{0} doesn't exist".format(f))
if i == (Nfiles - 1):
exit(1)
else:
continue
opened = False
filetype = None
# try to open object
for j, ob in enumerate(objs):
for k, r in enumerate(ob_reads[j]):
try:
# instantiate data class and try to read file
UV = ob()
getattr(UV, r)(f)
opened = True
uv.append(UV)
filetype = r.split('_')[-1]
if args.verbose is True:
print("opened {0} as a {1} file with the {2} pyuvdata object".format(f, filetype, ob_names[j]))
except (IOError, KeyError, ValueError, RuntimeError):
continue
# exit loop if opened
if opened is True:
break
if opened is True:
break
# if object isn't opened continue
if opened is False:
print("couldn't open {0} with any of the pyuvdata objects {1}".format(f, ob_names))
continue
# print out desired attribute(s) of data object
attrs = [x.split('.') for x in args.attrs.split(',')]
for j, attr in enumerate(attrs):
# try to get attribute
try:
Nnest = len(attr)
this_attr = getattr(UV, attr[0])
for k in range(Nnest - 1):
this_attr = getattr(this_attr, attr[k + 1])
# print to stdout
print("{0} of {1} is: {2}".format('.'.join(attr), f, this_attr))
exit_clean = True
except AttributeError:
print("Couldn't access '{0}' from {1}".format('.'.join(attr), f))
exit_clean = False
if args.interactive:
if len(uv) == 1:
uv = uv[0]
try:
from IPython import embed
embed()
except ImportError:
import code
code.interact(local=dict(globals(), **locals()))
else:
if exit_clean is True:
exit(0)
else:
exit(1)
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