https://github.com/cran/BDgraph
Revision c17dc94109f661b2a40cc99b32bfc6bbd93e9077 authored by Reza Mohammadi on 19 March 2019, 22:53:32 UTC, committed by cran-robot on 19 March 2019, 22:53:32 UTC
1 parent 123fcf5
Tip revision: c17dc94109f661b2a40cc99b32bfc6bbd93e9077 authored by Reza Mohammadi on 19 March 2019, 22:53:32 UTC
version 2.56
version 2.56
Tip revision: c17dc94
NEWS
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- CHANGES IN VERSION 2.19
* The Title in Description is changed.
* Function "I.g" is added.
- CHANGES IN VERSION 2.20
* Reversible jump MCMC algorithm is added to the "bdgraph()" fonction.
- CHANGES IN VERSION 2.23
* Function "I.g()" is chenged to "log_Ig()" and it is implemented in C++.
- CHANGES IN VERSION 2.24
* Function "phat()" is changed to "plinks()".
* Function "prob()" is changed to "pgraph()".
* Function "log_Ig()" is changed to "gnorm()".
- CHANGES IN VERSION 2.28
* The Title in Description is changed.
* Functions "bdgraph.ts()", "rgcwish()", and "rcwish()" are added to the package.
- CHANGES IN VERSION 2.36
* The BDMCMC algorithms are implimented in parallel using OpenMP in C++.
- CHANGES IN VERSION 2.38
* Function "bdgraph.mpl()" is added to the package, which is based on Marginal
Pseudo-Likelihood estimation.
* In algorithm "gcgm", step "copula" are implimented in parallel using OpenMP in C++.
* Function "bdgraph.ts" is implimented in parallel using OpenMP in C++.
* New reference related to the ratio of normalizing constant is added to manual.
- CHANGES IN VERSION 2.40
* Option "g.prior" is added to function "bdgraph()", for prior distribution of the graph.
* Option "cores" is added to function "bdgraph()", for determining the number of cores
to use for parallel execution.
* Function "transfer()" is added to the package.
- CHANGES IN VERSION 2.41
* Option "dgm-binary" is added to function "bdgraph()" which is for running Hill-Climbing
algorihtm for binary data.
* "configure" and "configure.ac" are added to configure checks of C++ codes.
- CHANGES IN VERSION 2.42
* Function "local_rates_ggm_mpl" in cpp is added for bdgraph.mpl function.
* configure and configure.ac is added to the package for Makevars file.
* Functions "bdgraph.ts", "rcwish", and "rcgwish" are removed from the package.
- CHANGES IN VERSION 2.44
* Functions "bdgraph.ts", "rcwish", and "rcgwish" are added to the package.
- CHANGES IN VERSION 2.46
* Function "rmvnorm" is added to the package.
- CHANGES IN VERSION 2.47
* Function "graph.sim" is added to the package.
* Function "plot.graph" is added to the package.
- CHANGES IN VERSION 2.51
* Bug fixed for "rgwish()" and "rcgwish()" functions.
* vignette is added to the package.
- CHANGES IN VERSION 2.52
* Option "threshold" is added to function "rgwish()".
* Option "threshold" is added to function "bdgraph()".
* Option "not.cont" is added to function "bdgraph()".
* In function "compare()", option "colnames" is changed to "main".
* Option "g.space" is removed from functions "bdgraph()" and "bdgraph.mpl()".
Instead user can use option "g.prior".
* Bug fixed for "bdgraph.ts()" function.
* Data set "churn" is added.
- CHANGES IN VERSION 2.53
* Files "configure" and "configure.ac" are removed and
files "Makevars" and "Makevars.win" are modified accordingly.
* In function "bdgraph()", "bdgraph.mpl()", and "bdgraph.ts()"
option "save.all" is changed to "save".
* In function "bdgraph()" and "bdgraph.mpl()", option "multi.update" is changed to "jump".
* In function "bdgraph()" and "bdgraph.ts()", option "prior.df" is changed to "df.prior".
* In function "pgraph()", option "adj_g" is changed to "adj".
- CHANGES IN VERSION 2.56
* In function "rgwish()", "rgcwish()" and "gnorm()", option "adj.g" is changed to "adj".
* In function "compare()", option "sim.obj" is changed to "target".
* In function "compare()", option "bdgraph.obj" is changed to "est".
* In function "compare()", option "bdgraph.obj2" is changed to "est2".
* In function "compare()", option "bdgraph.obj3" is changed to "est3".
* In function "plotroc()", option "sim.obj" is changed to "target".
* In function "plotroc()", option "bdgraph.obj" is changed to "est".
* In function "plotroc()", option "bdgraph.obj2" is changed to "est2".
* In function "plotroc()", option "bdgraph.obj3" is changed to "est3".
* In function "plotroc()", option "bdgraph.obj4" is changed to "est4".
* Bug fixed for "bdgraph()" function with option "method = gcgm".
* Function "summary.bdgraph", "plot.bdgraph", and "print.bdgraph" are modified.
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