https://github.com/pysam-developers/pysam
Revision cdc0ed12fbe2d7633b8fa47534ab2c2547f66b84 authored by Nils Homer on 20 October 2023, 10:12:28 UTC, committed by GitHub on 20 October 2023, 10:12:28 UTC
Add omitted tags to KNOWN_HEADER_FIELDS and VALID_HEADER_ORDER, so that AlignmentHeader.from_dict()/to_dict() will preserve all header field tags defined in the SAM specification. Addresses #1237. Exercise TP:linear in some header tests. Co-authored-by: John Marshall <jmarshall@hey.com>
1 parent 98a37ad
Tip revision: cdc0ed12fbe2d7633b8fa47534ab2c2547f66b84 authored by Nils Homer on 20 October 2023, 10:12:28 UTC
Add missing header tags as per the spec (PR #1238)
Add missing header tags as per the spec (PR #1238)
Tip revision: cdc0ed1
| File | Mode | Size |
|---|---|---|
| .github | ||
| bcftools | ||
| devtools | ||
| doc | ||
| htslib | ||
| import | ||
| linker_tests | ||
| pysam | ||
| samtools | ||
| tests | ||
| win32 | ||
| .cirrus.yml | -rw-r--r-- | 1.8 KB |
| .gitattributes | -rw-r--r-- | 467 bytes |
| .gitignore | -rw-r--r-- | 1.1 KB |
| .readthedocs.yaml | -rw-r--r-- | 304 bytes |
| .travis.disabled.yml | -rw-r--r-- | 3.1 KB |
| AUTHORS | -rw-r--r-- | 1.7 KB |
| COPYING | -rw-r--r-- | 1.1 KB |
| Containerfile | -rw-r--r-- | 306 bytes |
| INSTALL | -rw-r--r-- | 3.3 KB |
| MANIFEST.in | -rw-r--r-- | 1.2 KB |
| NEWS | -rw-r--r-- | 34.9 KB |
| README.rst | -rw-r--r-- | 1.9 KB |
| pyproject.toml | -rw-r--r-- | 1000 bytes |
| requirements-dev.txt | -rw-r--r-- | 19 bytes |
| setup.cfg | -rw-r--r-- | 1.6 KB |
| setup.py | -rw-r--r-- | 25.0 KB |
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