https://github.com/ctlab/phantasus
Revision d889878834801f9e472689ceb35010d9ece1952e authored by Alexey Sergushichev on 27 February 2018, 10:05:58 UTC, committed by Alexey Sergushichev on 27 February 2018, 10:05:58 UTC
Tip revision: d889878834801f9e472689ceb35010d9ece1952e authored by Alexey Sergushichev on 27 February 2018, 10:05:58 UTC
Merge branch 'master' of github.com:ctlab/phantasus
Merge branch 'master' of github.com:ctlab/phantasus
Tip revision: d889878
getGDS.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGDS}
\alias{getGDS}
\title{Load ExpressionSet from GEO Datasets}
\usage{
getGDS(name, destdir = tempdir(),
mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}
\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}
\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
ExpressionSet object wrapped in list, that was available by given
in \code{name} variable GEO identifier.
}
\description{
\code{getGDS} return the ExpressionSet object corresponding
to GEO Dataset identifier.
}
\examples{
getGDS('GDS4922')
}
Computing file changes ...
