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https://github.com/fenderglass/Ragout
05 April 2024, 18:02:14 UTC
Revision fdd51a3ad45b21f98b4e26c047ac37821af73690 authored by AvdeevPavel on 29 April 2014, 13:28:34 UTC, committed by AvdeevPavel on 29 April 2014, 13:28:34 UTC 
Add new breakpoint graph output
1 parent ace9ba2
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Tip revision: fdd51a3ad45b21f98b4e26c047ac37821af73690 authored by AvdeevPavel on 29 April 2014, 13:28:34 UTC
Add new breakpoint graph output
Tip revision: fdd51a3
Makefile 
OVLP_DIR := ragout/overlap/cpp_impl/
SYNTENY_DIR := ragout/maf2synteny/cpp_impl/
PYTHON_INCLUDE := /usr/include/python2.7
PYTHON_LIB := python2.7


UNAME := $(shell uname -s)
ifneq ($(wildcard /usr/bin/clang),)
	CPP := clang++ -std=c++11

	ifeq ($(UNAME),Darwin) #for macos
		CPP += -stdlib=libc++
		LDFLAGS := -l${PYTHON_LIB}
	endif
else
	CPP := g++ -std=c++11
endif


.PHONY: all overlap dependencies clean maf2synteny

export PYTHON_INCLUDE
export CPP
export LDFLAGS

all: overlap maf2synteny

overlap:
	make -C ${OVLP_DIR} pylib

maf2synteny:
	make -C ${SYNTENY_DIR} pylib

dependencies:
	scripts/install-deps.py

clean:
	make -C ${OVLP_DIR} pyclean
	make -C ${SYNTENY_DIR} pyclean
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