https://github.com/RadioAstronomySoftwareGroup/pyuvdata
Revision fdded632cc4f259c6f5be2dc6ea56e15ddcb0a96 authored by Bryna Hazelton on 26 May 2022, 21:59:13 UTC, committed by Matthew Kolopanis on 05 August 2022, 19:36:22 UTC
Since we set the apparent coords this is no longer possible. It's really only possible to detect this for uvh5 files and those are now fixed on read by default.
1 parent 9108557
Raw File
Tip revision: fdded632cc4f259c6f5be2dc6ea56e15ddcb0a96 authored by Bryna Hazelton on 26 May 2022, 21:59:13 UTC
Remove testing for old phase method on object
Tip revision: fdded63
setup.py
# -*- mode: python; coding: utf-8 -*-
# Copyright (c) 2018 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License

import glob
import io
import os
import platform
import sys
from sysconfig import get_config_var

import numpy
from Cython.Build import cythonize
from packaging.version import parse
from setuptools import Extension, find_namespace_packages, setup

# add pyuvdata to our path in order to use the branch_scheme function
sys.path.append("pyuvdata")
from branch_scheme import branch_scheme  # noqa

with io.open("README.md", "r", encoding="utf-8") as readme_file:
    readme = readme_file.read()


def is_platform_mac():
    return sys.platform == "darwin"


def is_platform_windows():
    return sys.platform == "win32"


# For mac, ensure extensions are built for macos 10.9 when compiling on a
# 10.9 system or above, overriding distuitls behaviour which is to target
# the version that python was built for. This may be overridden by setting
# MACOSX_DEPLOYMENT_TARGET before calling setup.py
# implementation based on pandas, see https://github.com/pandas-dev/pandas/issues/23424
if is_platform_mac():
    if "MACOSX_DEPLOYMENT_TARGET" not in os.environ:
        current_system = parse(platform.mac_ver()[0])
        python_target = parse(get_config_var("MACOSX_DEPLOYMENT_TARGET"))
        if python_target < parse("10.9") and current_system >= parse("10.9"):
            os.environ["MACOSX_DEPLOYMENT_TARGET"] = "10.9"

# define the cython compile args, depending on platform
if is_platform_windows():
    extra_compile_args = ["/Ox", "/openmp"]
    extra_link_args = ["/openmp"]
elif is_platform_mac():
    extra_compile_args = ["-O3"]
    extra_link_args = []
else:
    extra_compile_args = ["-O3", "-fopenmp"]
    extra_link_args = ["-fopenmp"]

global_c_macros = [
    ("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION"),
]

miriad_extension = Extension(
    "pyuvdata._miriad",
    sources=[
        "pyuvdata/uvdata/src/miriad_wrap.pyx",
        "pyuvdata/uvdata/src/uvio.c",
        "pyuvdata/uvdata/src/hio.c",
        "pyuvdata/uvdata/src/pack.c",
        "pyuvdata/uvdata/src/bug.c",
        "pyuvdata/uvdata/src/dio.c",
        "pyuvdata/uvdata/src/headio.c",
        "pyuvdata/uvdata/src/maskio.c",
    ],
    define_macros=global_c_macros,
    include_dirs=["pyuvdata/uvdata/src/", numpy.get_include()],
)

corr_fits_extension = Extension(
    "pyuvdata._corr_fits",
    sources=["pyuvdata/uvdata/corr_fits.pyx"],
    define_macros=global_c_macros,
    include_dirs=[numpy.get_include()],
    extra_compile_args=extra_compile_args,
    extra_link_args=extra_link_args,
)

utils_extension = Extension(
    "pyuvdata._utils",
    sources=["pyuvdata/utils.pyx"],
    define_macros=global_c_macros,
    include_dirs=[numpy.get_include()],
    extra_compile_args=extra_compile_args,
)

extensions = [corr_fits_extension, utils_extension]

# don't build miriad on windows
if not is_platform_windows():
    extensions.append(miriad_extension)

astroquery_reqs = ["astroquery>=0.4.4"]
novas_reqs = ["novas", "novas_de405"]
casa_reqs = ["python-casacore>=3.3.1"]
healpix_reqs = ["astropy_healpix>=0.6"]
cst_reqs = ["pyyaml>=5.1"]
test_reqs = (
    casa_reqs
    + astroquery_reqs
    + healpix_reqs
    + novas_reqs
    + cst_reqs
    + [
        "pytest>=6.2",
        "pytest-xdist",
        "pytest-cases>=3.6.9",
        "pytest-cov",
        "cython",
        "coverage",
        "pre-commit",
    ]
)
doc_reqs = ["sphinx", "pypandoc"]

setup_args = {
    "name": "pyuvdata",
    "author": "Radio Astronomy Software Group",
    "url": "https://github.com/RadioAstronomySoftwareGroup/pyuvdata",
    "license": "BSD",
    "description": "an interface for astronomical interferometeric datasets in python",
    "long_description": readme,
    "long_description_content_type": "text/markdown",
    "package_dir": {"pyuvdata": "pyuvdata"},
    "packages": find_namespace_packages(),
    "ext_modules": cythonize(extensions, language_level=3),
    "scripts": [fl for fl in glob.glob("scripts/*") if not os.path.isdir(fl)],
    "use_scm_version": {"local_scheme": branch_scheme},
    "include_package_data": True,
    "install_requires": [
        "astropy>=5.0.4",
        "h5py>=3.0",
        "numpy>=1.19",
        "pyerfa>=2.0",
        "scipy>=1.3",
        "setuptools_scm<7.0|>=7.0.3",
    ],
    "extras_require": {
        "astroquery": astroquery_reqs,
        "casa": casa_reqs,
        "novas": novas_reqs,
        "healpix": healpix_reqs,
        "cst": cst_reqs,
        "all": casa_reqs + healpix_reqs + cst_reqs + novas_reqs + astroquery_reqs,
        "test": test_reqs,
        "doc": doc_reqs,
        "dev": test_reqs + doc_reqs,
    },
    "classifiers": [
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: BSD License",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Topic :: Scientific/Engineering :: Astronomy",
    ],
    "keywords": "radio astronomy interferometry",
}

if __name__ == "__main__":
    setup(**setup_args)
back to top