swh:1:snp:0c004a03453a29b80f921a24433f7e780b9ceb53
Tip revision: 80c7b427b73eabcf1cbf64adf47708e2640d3ffb authored by Nitesh Turaga on 29 October 2019, 17:11:02 UTC
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch
Tip revision: 80c7b42
testgseaPlot.R
context("GSEA plot")
library(jsonlite)
library(Biobase)
test_that("gseaPlot works", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE))
expect_true(file.exists(f))
})
test_that("gseaPlot with heatmap works for single column", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
es <- es[, 1]
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, addHeatmap = TRUE))
expect_true(file.exists(f))
})