swh:1:snp:0c004a03453a29b80f921a24433f7e780b9ceb53
Tip revision: c6bb0e960554a23eb712690cbd7f8e3f7d79ca0d authored by Alexey Sergushichev on 02 July 2021, 13:19:49 UTC
Update js
Update js
Tip revision: c6bb0e9
testpcaPlot.R
context("PCA Plot")
test_that("pcaPlot finishes with result", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
expect_is(calcPCA(es), "json")
})
test_that("pcaPlot results in columnsXcolumns matrix", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
expect_equal(nrow(jsonlite::fromJSON(calcPCA(es))$pca),
length(sampleNames(es)))
})
test_that("pcaPlot drops NA rows", {
es <- read.gct(system.file("testdata/centers.gct", package="phantasus"))
pca <- jsonlite::fromJSON(calcPCA(es))
expect_equal(nrow(exprs(es)), 6)
expect_equal(nrow(pca$pca), 5)
})