| a408744 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:51:42 UTC | chore: use latest git snapshot for tables for python >= 3.10 The last release they made does not work with Python 3.10. Fixes are in the GitHub repo but pending a new release. | 08 October 2021, 08:51:42 UTC |
| 33e1e81 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:35:53 UTC | chore: add wheel to dev requirements | 08 October 2021, 08:35:53 UTC |
| f28eda7 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:34:50 UTC | ci: install liblzo2-dev for pytables The docs say it's optional, but the pytables build failure seems to indicate it's required. | 08 October 2021, 08:34:50 UTC |
| 6f99b51 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:26:42 UTC | ci: install hdf5-dev for pytables | 08 October 2021, 08:26:42 UTC |
| d6f1f66 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:07:33 UTC | fix: quote "3.10" in ci otherwise it looks for 3.1 Reference: - https://github.com/actions/setup-python/issues/249#issuecomment-934299359 | 08 October 2021, 08:07:33 UTC |
| ca08685 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:02:04 UTC | ci: add python 3.10 to test matrix 3.10 was released recently. https://docs.python.org/3.10/whatsnew/3.10.html | 08 October 2021, 08:02:04 UTC |
| d23e949 | Ankur Sinha (Ankur Sinha Gmail) | 08 October 2021, 08:01:21 UTC | chore: add requirements file for development | 08 October 2021, 08:01:21 UTC |
| 33d16f5 | Ankur Sinha | 07 October 2021, 15:48:49 UTC | Merge pull request #112 from NeuralEnsemble/feat/format-with-black feat: format with black | 07 October 2021, 15:48:49 UTC |
| dfaf732 | Ankur Sinha (Ankur Sinha Gmail) | 27 September 2021, 08:18:57 UTC | feat: update doc conf | 27 September 2021, 08:18:57 UTC |
| d2726a8 | Ankur Sinha (Ankur Sinha Gmail) | 27 September 2021, 08:17:38 UTC | feat: format with black | 27 September 2021, 08:17:38 UTC |
| 645a3a0 | Padraig Gleeson | 17 September 2021, 09:30:39 UTC | Initial notebook for HDF5 serialisation | 17 September 2021, 09:30:39 UTC |
| 6bfe0c8 | Ankur Sinha | 25 August 2021, 17:20:36 UTC | Merge pull request #109 from NeuralEnsemble/feat/pydata-theme feat: use pydata theme | 25 August 2021, 17:20:36 UTC |
| 0ac797d | Ankur Sinha (Ankur Sinha Gmail) | 25 August 2021, 17:18:33 UTC | fix: make flake8 ignore docs folder | 25 August 2021, 17:18:33 UTC |
| 5a0a4b5 | Ankur Sinha (Ankur Sinha Gmail) | 25 August 2021, 17:15:10 UTC | fix: make pytest ignore python files in doc folder | 25 August 2021, 17:15:10 UTC |
| e74b09e | Ankur Sinha (Ankur Sinha Gmail) | 25 August 2021, 16:24:09 UTC | feat: switch to pydata theme and generate nml.py docs manually | 25 August 2021, 16:24:09 UTC |
| 95b7093 | Ankur Sinha (Ankur Sinha Gmail) | 25 August 2021, 14:28:35 UTC | feat: use pydata theme https://sphinx-themes.org/sample-sites/pydata-sphinx-theme/ | 25 August 2021, 14:31:07 UTC |
| c3a0f93 | Padraig Gleeson | 25 August 2021, 08:10:59 UTC | Merge pull request #108 from NeuralEnsemble/feat/improve-nml-docs feat: add text explaining correspondence between schema and core classes | 25 August 2021, 08:10:59 UTC |
| 9b30882 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:16:16 UTC | chore(nml.py): regenerate | 24 August 2021, 11:16:16 UTC |
| 3795f15 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:15:49 UTC | docs(helper_methods): add docstrings to remaining methods | 24 August 2021, 11:15:49 UTC |
| 878c3a2 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:10:01 UTC | chore(nml.py): regenerate | 24 August 2021, 11:10:01 UTC |
| f4a2a0b | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:09:35 UTC | fix: correct docstring indentation | 24 August 2021, 11:09:35 UTC |
| fbd3784 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:07:08 UTC | chore(nml.py): regenerate to incorporate new helper function docs | 24 August 2021, 11:07:08 UTC |
| db30961 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 11:01:42 UTC | refactor(utils.py): minor cosmetic changes Remove extra white spaces, remove duplicate and unneeded imports. | 24 August 2021, 11:01:42 UTC |
| aef0659 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:58:18 UTC | docs: document utils.py | 24 August 2021, 10:58:18 UTC |
| 8646091 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:57:23 UTC | docs(helper_methods): document helper methods | 24 August 2021, 10:57:23 UTC |
| 3ca2407 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:15:34 UTC | chore: use better section title | 24 August 2021, 10:15:34 UTC |
| 004a1a8 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:10:22 UTC | fix: do not list inherited members It lists all the generateDS functions that do not need to be exposed to NeuroML users. | 24 August 2021, 10:10:22 UTC |
| ddc23cb | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:10:07 UTC | feat: correct rst usage | 24 August 2021, 10:10:07 UTC |
| 1bf6889 | Ankur Sinha (Ankur Sinha Gmail) | 24 August 2021, 10:01:42 UTC | feat: add text explaining correspondence between schema and core classes Fixes #107. | 24 August 2021, 10:01:42 UTC |
| 6719f86 | Padraig Gleeson | 28 June 2021, 11:46:49 UTC | Merge branch 'development' of https://github.com/NeuralEnsemble/libNeuroML into development | 28 June 2021, 11:46:49 UTC |
| 67824d2 | Padraig Gleeson | 28 June 2021, 11:46:25 UTC | Increment version to 0.2.57 | 28 June 2021, 11:46:25 UTC |
| e39ac77 | Padraig Gleeson | 25 June 2021, 16:15:44 UTC | Merge pull request #105 from NeuralEnsemble/feat/more-cell-helpers Add more cell helpers | 25 June 2021, 16:15:44 UTC |
| f372389 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:58:39 UTC | chore(nml.py): regenerate | 25 June 2021, 15:58:39 UTC |
| 39fd4ac | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:57:42 UTC | improvement(nml.py): improve helper method names | 25 June 2021, 15:57:42 UTC |
| 239ae0d | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:21:23 UTC | chore(nml.py): regenerate | 25 June 2021, 15:21:23 UTC |
| b3bada8 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:20:16 UTC | fix: fix syntax typo | 25 June 2021, 15:20:16 UTC |
| a42863c | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:15:54 UTC | chore(nml.py): regenerate | 25 June 2021, 15:15:54 UTC |
| 9d6f5b3 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 15:13:59 UTC | improvement(typing): improve typing hints in helper methods | 25 June 2021, 15:13:59 UTC |
| dd740c9 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 10:01:16 UTC | chore: ignore mypy cache | 25 June 2021, 15:07:16 UTC |
| c55d5db | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 10:00:17 UTC | feat(nml.py): add helper methods to Cell - get segments matching a string - get segment group by id - get segment groups matching a string | 25 June 2021, 15:06:27 UTC |
| 57dd046 | Padraig Gleeson | 25 June 2021, 14:04:06 UTC | Merge pull request #104 from NeuralEnsemble/feat/remove-valuecacrosssegorseggroup Feat/remove valuecacrosssegorseggroup | 25 June 2021, 14:04:06 UTC |
| 61b64d0 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 12:12:42 UTC | chore(nml.py): regenerate for updated schema file | 25 June 2021, 12:12:42 UTC |
| ddd1810 | Ankur Sinha (Ankur Sinha Gmail) | 25 June 2021, 12:12:15 UTC | chore(schema): sync with latest snapshot | 25 June 2021, 12:12:15 UTC |
| 3b25682 | Ankur Sinha (Ankur Sinha Gmail) | 23 June 2021, 16:29:58 UTC | feat: regenerate nml.py | 23 June 2021, 16:36:14 UTC |
| 8341edc | Ankur Sinha (Ankur Sinha Gmail) | 23 June 2021, 16:29:51 UTC | feat: update 2.2 schema | 23 June 2021, 16:29:51 UTC |
| fe2bfe2 | Ankur Sinha | 10 June 2021, 15:21:49 UTC | Merge pull request #103 from NeuralEnsemble/fix/clear-up-rtd fix(autodoc): ensure that all classes are included in RTD | 10 June 2021, 15:21:49 UTC |
| 578ba4a | Ankur Sinha (Ankur Sinha Gmail) | 09 June 2021, 15:15:43 UTC | fix(autodoc): ensure that all classes are included in RTD We now include classes that do not have a doc-string (those that do not have <documentation> properties in the Schema). Additionally, to keep this page readable, we skip out lots of the validate* methods and members that users should not be using. | 09 June 2021, 15:15:43 UTC |
| 7676c39 | Padraig Gleeson | 09 April 2021, 08:24:59 UTC | Regenerated | 09 April 2021, 08:24:59 UTC |
| b3fb24a | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 17:14:26 UTC | docs: add 0.2.55 changelog | 26 March 2021, 17:14:26 UTC |
| f3af4ce | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 17:10:47 UTC | docs: update links in Readme to new docs | 26 March 2021, 17:10:47 UTC |
| 39b9c85 | Padraig Gleeson | 26 March 2021, 17:05:25 UTC | Add v2.2 schema file | 26 March 2021, 17:05:25 UTC |
| da70905 | Padraig Gleeson | 26 March 2021, 16:54:24 UTC | Merge branch 'master' into development | 26 March 2021, 16:54:24 UTC |
| e1b3651 | Padraig Gleeson | 26 March 2021, 16:53:50 UTC | Specify version as nml2.2 | 26 March 2021, 16:53:50 UTC |
| 632c1bc | Padraig Gleeson | 26 March 2021, 16:52:20 UTC | Merge pull request #101 from NeuralEnsemble/fix/update-docs Update documentation | 26 March 2021, 16:52:20 UTC |
| 56eeabb | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 16:35:29 UTC | docs: add extra requirements for doc generation | 26 March 2021, 16:35:29 UTC |
| 5590d37 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 16:29:00 UTC | fix(nml.py): revert to generation using py2.7 and generateDS.py 2.30.11 This commit undoes the changes made to the generateds_config.py file and regenerates nml.py with the version of Py and generateDS.py that we know to work. All tests and examples run correctly now. | 26 March 2021, 16:29:00 UTC |
| 88eb71c | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 15:38:12 UTC | fix(nml.py): fix formatting functions Also filed upstream to see if this is an issue with generateDS.py: https://sourceforge.net/p/generateds/tickets/13/ | 26 March 2021, 15:38:12 UTC |
| 51a283f | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 15:20:21 UTC | chore(nml.py): regenerate with getters and setters | 26 March 2021, 15:20:21 UTC |
| b991951 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 15:17:36 UTC | ci: make flake ignore nml.py | 26 March 2021, 15:17:36 UTC |
| 702d9b3 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 14:37:40 UTC | chore(nml.py): regenerate with newest generateds.py | 26 March 2021, 14:37:40 UTC |
| 87d3e57 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 11:42:46 UTC | style: whitespace fixes | 26 March 2021, 11:42:46 UTC |
| df160d6 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 11:41:03 UTC | chore(nml.py): update readme to note generateds_config usage | 26 March 2021, 11:41:03 UTC |
| 1723c5e | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 11:40:41 UTC | chore(nml.py): regenerate with fixed generateds_config.py | 26 March 2021, 11:40:41 UTC |
| 1d2367c | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 11:40:18 UTC | fix(nml.py): update generateds config script | 26 March 2021, 11:40:18 UTC |
| 1e9d6ed | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 10:05:39 UTC | chore(nml.py): regenerate nml.py | 26 March 2021, 10:05:39 UTC |
| 2aedfd4 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 10:04:33 UTC | enh(nml.py): add docstrings to helper methods This will also ensure that they get picked up by sphinx for the docs | 26 March 2021, 10:04:33 UTC |
| 7a64719 | Ankur Sinha (Ankur Sinha Gmail) | 26 March 2021, 09:59:32 UTC | enh(docs): split API docs to individual files | 26 March 2021, 09:59:32 UTC |
| 580d54e | Padraig Gleeson | 26 March 2021, 09:50:07 UTC | Bump to v0.2.56 for dev | 26 March 2021, 09:50:07 UTC |
| ca8a2c0 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 17:29:42 UTC | chore: add GH actions and RTD badges | 25 March 2021, 17:29:42 UTC |
| 441b7a1 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 16:51:41 UTC | enh(docs): update contributing doc | 25 March 2021, 16:51:41 UTC |
| a40c08d | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 16:17:44 UTC | enh(docs): update installation instructions | 25 March 2021, 16:17:44 UTC |
| df4dafc | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:55:44 UTC | enh(docs): update introduction | 25 March 2021, 15:55:44 UTC |
| 331168f | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:52:00 UTC | enh(docs): use sphinx-bibtex extension to refer to paper(s) | 25 March 2021, 15:52:00 UTC |
| 1127b39 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:37:37 UTC | chore(docs): remove reference to missing document | 25 March 2021, 15:37:37 UTC |
| 5ef5ca4 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:35:18 UTC | chore(docs): fix flake warnings | 25 March 2021, 15:35:18 UTC |
| 895a841 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:29:13 UTC | enh(docs): fix version information In neuroml/__init__.py, "__version__" is mentioned twice: in the second line to generate "__version_info__". So, the value from the later line, ".", was being picked up in conf.py. | 25 March 2021, 15:29:13 UTC |
| 0d7c125 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:23:55 UTC | enh(docs): reorganise index page | 25 March 2021, 15:24:59 UTC |
| 8da0160 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:17:37 UTC | enh(docs): remove tools page We'll refer to docs.neuroml.org for this | 25 March 2021, 15:24:56 UTC |
| 1d8a6af | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:16:19 UTC | enh(docs): include API docs in main file | 25 March 2021, 15:24:51 UTC |
| fad3c2f | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 15:03:28 UTC | chore(docs): reorganise docs Remove some incomplete docs, add others to TOC, fix some issues | 25 March 2021, 15:24:46 UTC |
| abef045 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 14:46:51 UTC | fix(docs): correct page reference | 25 March 2021, 15:24:42 UTC |
| 6117956 | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 14:25:20 UTC | chore(docs): move logo to _static folder | 25 March 2021, 15:24:37 UTC |
| 0baf55e | Ankur Sinha (Ankur Sinha Gmail) | 25 March 2021, 14:23:46 UTC | chore(docs): use rst suffix Most editors use the file name suffix to pick up file types, so let's use the standard suffix here. | 25 March 2021, 15:24:33 UTC |
| fc73ff0 | Padraig Gleeson | 22 March 2021, 15:27:09 UTC | Merge pull request #100 from NeuralEnsemble/development For NML v2.1 release | 22 March 2021, 15:27:09 UTC |
| dba03cf | Padraig Gleeson | 22 March 2021, 11:18:56 UTC | Bump to v0.2.55 for merge to master | 22 March 2021, 11:18:56 UTC |
| d1354eb | Padraig Gleeson | 18 March 2021, 19:49:06 UTC | Merge branch 'master' into development | 18 March 2021, 19:49:06 UTC |
| a0b3080 | Padraig Gleeson | 18 March 2021, 19:47:27 UTC | Merge pull request #98 from NeuralEnsemble/fix/update-py3 fix: update for py3 | 18 March 2021, 19:47:27 UTC |
| 9deb151 | Ankur Sinha (Ankur Sinha Gmail) | 11 March 2021, 10:30:11 UTC | fix: ignore flake false positives about undefined names NOTE: MorphologyImportError is undefined and should be fixed. | 11 March 2021, 10:30:11 UTC |
| 9c924b8 | Ankur Sinha (Ankur Sinha Gmail) | 11 March 2021, 10:23:40 UTC | fix: include necessary imports | 11 March 2021, 10:23:40 UTC |
| 18361d2 | Ankur Sinha (Ankur Sinha Gmail) | 11 March 2021, 10:06:29 UTC | enh: fix example location in GH action CI | 11 March 2021, 10:06:29 UTC |
| fcbff53 | Ankur Sinha (Ankur Sinha Gmail) | 11 March 2021, 10:02:38 UTC | enh: setup GH Actions CI pytables seems to provide wheels for py3.9 now, so we don't need to apt install anything as we do on travis. Fixes #97 | 11 March 2021, 10:03:12 UTC |
| 1d5f060 | Ankur Sinha (Ankur Sinha Gmail) | 11 March 2021, 09:46:50 UTC | fix: update for py3 | 11 March 2021, 09:46:50 UTC |
| 09f751f | Ankur Sinha (Ankur Sinha Gmail) | 03 March 2021, 19:44:41 UTC | enh: add issue templates | 03 March 2021, 19:44:41 UTC |
| 6439df7 | Padraig Gleeson | 03 March 2021, 11:40:27 UTC | Merge pull request #94 from sanjayankur31/fix/issue-92 Test with py3.9, partially fix some issues in #92, move to pytest | 03 March 2021, 11:40:27 UTC |
| 0185b0e | Ankur Sinha (Ankur Sinha Gmail) | 01 March 2021, 15:44:13 UTC | chore: limit python support strings to ones tested in CI only | 01 March 2021, 15:44:13 UTC |
| a8b3c5b | Ankur Sinha (Ankur Sinha Gmail) | 01 March 2021, 15:31:29 UTC | chore: add status badges | 01 March 2021, 15:41:20 UTC |
| dd25c6a | Ankur Sinha (Ankur Sinha Gmail) | 26 February 2021, 14:20:14 UTC | undo: re-add python version limits for simplejson | 26 February 2021, 14:20:14 UTC |
| 1ee805b | Ankur Sinha (Ankur Sinha Gmail) | 26 February 2021, 14:06:11 UTC | fix: use getargspec on py2, getfullargspec on py3 Since we still support Py2.7, we must support both for the time being. | 26 February 2021, 14:06:11 UTC |
| 460cdf9 | Ankur Sinha (Ankur Sinha Gmail) | 26 February 2021, 13:51:31 UTC | chore: update travis to use pytest | 26 February 2021, 13:51:31 UTC |
| 2f03e23 | Ankur Sinha (Ankur Sinha Gmail) | 26 February 2021, 13:15:50 UTC | test: use pytest instead of deprecated nose Nose is now deprecated, so we move to pytest: https://nose.readthedocs.io/en/latest/ | 26 February 2021, 13:15:50 UTC |
