| 57ef4ee | Jerome Kelleher | 14 December 2021, 19:12:35 UTC | Merge pull request #1953 from jeromekelleher/time-units-and-refseq Time units and refseq | 14 December 2021, 19:12:35 UTC |
| 74b7018 | Jerome Kelleher | 13 December 2021, 15:35:19 UTC | Error if time_units is uncalibrated in sim_mutations Closes #1877 | 14 December 2021, 19:04:56 UTC |
| 88dcc54 | Jerome Kelleher | 13 December 2021, 15:16:42 UTC | Add tests to verify reference sequence untouched Also check that sim_mutations maintains time_units Closes #1951 | 14 December 2021, 19:04:56 UTC |
| 8f86bb9 | mergify[bot] | 14 December 2021, 14:02:06 UTC | Merge pull request #1958 from tskit-dev/dependabot/pip/requirements/CI-tests-conda/demes-0.2.1 Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-tests-conda | 14 December 2021, 14:02:06 UTC |
| 0812d60 | dependabot[bot] | 13 December 2021, 22:07:20 UTC | Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-tests-conda Bumps [demes](https://github.com/popsim-consortium/demes-python) from 0.2.0 to 0.2.1. - [Release notes](https://github.com/popsim-consortium/demes-python/releases) - [Changelog](https://github.com/popsim-consortium/demes-python/blob/main/CHANGELOG.md) - [Commits](https://github.com/popsim-consortium/demes-python/compare/0.2.0...0.2.1) --- updated-dependencies: - dependency-name: demes dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 14 December 2021, 13:51:47 UTC |
| 28a6484 | mergify[bot] | 13 December 2021, 22:47:34 UTC | Merge pull request #1959 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/scipy-1.7.3 Bump scipy from 1.7.1 to 1.7.3 in /requirements/CI-tests-pip | 13 December 2021, 22:47:34 UTC |
| 2210354 | dependabot[bot] | 13 December 2021, 22:25:23 UTC | Bump scipy from 1.7.1 to 1.7.3 in /requirements/CI-tests-pip Bumps [scipy](https://github.com/scipy/scipy) from 1.7.1 to 1.7.3. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.1...v1.7.3) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 13 December 2021, 22:40:05 UTC |
| 9d68530 | mergify[bot] | 13 December 2021, 22:38:34 UTC | Merge pull request #1957 from tskit-dev/dependabot/pip/requirements/CI-docs/demes-0.2.1 Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-docs | 13 December 2021, 22:38:34 UTC |
| 3ba2885 | dependabot[bot] | 13 December 2021, 22:07:19 UTC | Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-docs Bumps [demes](https://github.com/popsim-consortium/demes-python) from 0.2.0 to 0.2.1. - [Release notes](https://github.com/popsim-consortium/demes-python/releases) - [Changelog](https://github.com/popsim-consortium/demes-python/blob/main/CHANGELOG.md) - [Commits](https://github.com/popsim-consortium/demes-python/compare/0.2.0...0.2.1) --- updated-dependencies: - dependency-name: demes dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 13 December 2021, 22:25:13 UTC |
| 52fee8d | mergify[bot] | 13 December 2021, 22:24:59 UTC | Merge pull request #1939 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/newick-1.3.1 Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-tests-pip | 13 December 2021, 22:24:59 UTC |
| 1e267b3 | dependabot[bot] | 13 December 2021, 22:07:15 UTC | Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-tests-pip Bumps [newick](https://github.com/dlce-eva/python-newick) from 1.3.0 to 1.3.1. - [Release notes](https://github.com/dlce-eva/python-newick/releases) - [Changelog](https://github.com/dlce-eva/python-newick/blob/master/CHANGELOG.md) - [Commits](https://github.com/dlce-eva/python-newick/compare/v1.3.0...v1.3.1) --- updated-dependencies: - dependency-name: newick dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 13 December 2021, 22:18:01 UTC |
| 24fc7a1 | mergify[bot] | 13 December 2021, 22:15:14 UTC | Merge pull request #1956 from tskit-dev/dependabot/pip/requirements/CI-complete/demes-0.2.1 Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-complete | 13 December 2021, 22:15:14 UTC |
| 573ca58 | dependabot[bot] | 13 December 2021, 22:07:17 UTC | Bump demes from 0.2.0 to 0.2.1 in /requirements/CI-complete Bumps [demes](https://github.com/popsim-consortium/demes-python) from 0.2.0 to 0.2.1. - [Release notes](https://github.com/popsim-consortium/demes-python/releases) - [Changelog](https://github.com/popsim-consortium/demes-python/blob/main/CHANGELOG.md) - [Commits](https://github.com/popsim-consortium/demes-python/compare/0.2.0...0.2.1) --- updated-dependencies: - dependency-name: demes dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 13 December 2021, 22:07:17 UTC |
| 10c8444 | mergify[bot] | 13 December 2021, 20:36:42 UTC | Merge pull request #1955 from molpopgen/add_sweep_warning_to_docstring Add warning that soft sweeps are currently not possible. | 13 December 2021, 20:36:42 UTC |
| 38dc003 | molpopgen | 13 December 2021, 17:58:54 UTC | Add warning that soft sweeps are currently not possible. | 13 December 2021, 20:29:43 UTC |
| ea2cdd5 | Jerome Kelleher | 13 December 2021, 20:26:29 UTC | Merge pull request #1954 from jeromekelleher/metadata-batch Metadata fixes | 13 December 2021, 20:26:29 UTC |
| 39579c8 | Jerome Kelleher | 13 December 2021, 17:12:30 UTC | Use population names from metadata in from_old_style Closes #1950 | 13 December 2021, 19:19:19 UTC |
| 6e04d3e | Jerome Kelleher | 13 December 2021, 16:52:21 UTC | Support minimal JSON schema. Closes #1947 | 13 December 2021, 16:52:21 UTC |
| 50a83e6 | mergify[bot] | 13 December 2021, 10:05:10 UTC | Merge pull request #1945 from jeromekelleher/tskit_C_0.99.15 Tskit C 0.99.15/python 0.4.0 and code reorg | 13 December 2021, 10:05:10 UTC |
| e673c03 | Jerome Kelleher | 09 December 2021, 14:24:39 UTC | Fixup packaging Bump python requirements for tskit Add check for C library version fix workflows Update packaging | 13 December 2021, 09:56:20 UTC |
| 3034375 | Jerome Kelleher | 09 December 2021, 14:21:40 UTC | Move the tskit submodule | 09 December 2021, 14:21:40 UTC |
| f6c533a | Jerome Kelleher | 09 December 2021, 14:17:16 UTC | Use tskit meson wrapfile for C lib development | 09 December 2021, 14:18:58 UTC |
| 57f2e98 | Jerome Kelleher | 09 December 2021, 14:10:40 UTC | Fix tests assuming pedigree sorting | 09 December 2021, 14:10:40 UTC |
| d88a28c | Jerome Kelleher | 09 December 2021, 14:04:33 UTC | Pin tskit to >= 0.4.0 Also fix tests | 09 December 2021, 14:04:33 UTC |
| 8c85715 | Jerome Kelleher | 09 December 2021, 14:02:19 UTC | Basic code changes for C_0.99.15 & python build | 09 December 2021, 14:02:19 UTC |
| c5633b3 | Jerome Kelleher | 09 December 2021, 13:53:30 UTC | Update tskit to C API 0.99.15 | 09 December 2021, 13:53:30 UTC |
| ab11981 | Jerome Kelleher | 09 December 2021, 13:51:59 UTC | Remove kastore submodule | 09 December 2021, 13:51:59 UTC |
| c034a5d | mergify[bot] | 07 December 2021, 12:56:36 UTC | Merge pull request #1940 from tskit-dev/dependabot/pip/requirements/CI-complete/scipy-1.7.3 Bump scipy from 1.7.1 to 1.7.3 in /requirements/CI-complete | 07 December 2021, 12:56:36 UTC |
| 69ee8f1 | dependabot[bot] | 06 December 2021, 22:08:00 UTC | Bump scipy from 1.7.1 to 1.7.3 in /requirements/CI-complete Bumps [scipy](https://github.com/scipy/scipy) from 1.7.1 to 1.7.3. - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.7.1...v1.7.3) --- updated-dependencies: - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 07 December 2021, 12:44:24 UTC |
| 0ff343b | mergify[bot] | 07 December 2021, 12:43:40 UTC | Merge pull request #1941 from grahamgower/remove-hypothesis Remove demes/hypothesis code. | 07 December 2021, 12:43:40 UTC |
| 5c4eb2d | Graham Gower | 07 December 2021, 08:38:33 UTC | Remove demes/hypothesis code. This was more trouble than it was worth and is being removed from demes. | 07 December 2021, 08:38:33 UTC |
| f5848a9 | mergify[bot] | 05 December 2021, 19:12:49 UTC | Merge pull request #1938 from grahamgower/demes-cloning-selfing from_demes(): check selfing_rate and cloning_rate are zero. | 05 December 2021, 19:12:49 UTC |
| bfefcb1 | Graham Gower | 04 December 2021, 11:14:43 UTC | from_demes(): check selfing_rate and cloning_rate are zero. Closes #1937. | 05 December 2021, 18:17:02 UTC |
| c3b86d3 | mergify[bot] | 01 December 2021, 20:19:49 UTC | Merge pull request #1936 from apragsdale/demes-sources Handle pulses in demes 0.2.0 | 01 December 2021, 20:19:49 UTC |
| d771279 | Aaron Ragsdale | 01 December 2021, 15:52:12 UTC | Handle pulses in demes 0.2.0 | 01 December 2021, 19:30:43 UTC |
| 9b50ac7 | mergify[bot] | 29 November 2021, 22:31:25 UTC | Merge pull request #1935 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/hypothesis-6.29.0 Bump hypothesis from 6.24.2 to 6.29.0 in /requirements/CI-tests-pip | 29 November 2021, 22:31:25 UTC |
| 8321ebf | dependabot[bot] | 29 November 2021, 22:06:37 UTC | Bump hypothesis from 6.24.2 to 6.29.0 in /requirements/CI-tests-pip Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.24.2 to 6.29.0. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.24.2...hypothesis-python-6.29.0) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 29 November 2021, 22:24:19 UTC |
| b373f53 | mergify[bot] | 29 November 2021, 22:23:58 UTC | Merge pull request #1933 from tskit-dev/dependabot/pip/requirements/CI-docs/matplotlib-3.5.0 Bump matplotlib from 3.4.3 to 3.5.0 in /requirements/CI-docs | 29 November 2021, 22:23:58 UTC |
| a334f96 | dependabot[bot] | 29 November 2021, 22:06:18 UTC | Bump matplotlib from 3.4.3 to 3.5.0 in /requirements/CI-docs Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.4.3 to 3.5.0. - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](https://github.com/matplotlib/matplotlib/compare/v3.4.3...v3.5.0) --- updated-dependencies: - dependency-name: matplotlib dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 29 November 2021, 22:15:11 UTC |
| 8e63f87 | mergify[bot] | 29 November 2021, 22:14:47 UTC | Merge pull request #1934 from tskit-dev/dependabot/pip/requirements/CI-complete/python-jsonschema-objects-0.4.1 Bump python-jsonschema-objects from 0.4.0 to 0.4.1 in /requirements/CI-complete | 29 November 2021, 22:14:47 UTC |
| d0c5c8a | dependabot[bot] | 29 November 2021, 22:06:29 UTC | Bump python-jsonschema-objects in /requirements/CI-complete Bumps [python-jsonschema-objects](https://github.com/cwacek/python-jsonschema-objects) from 0.4.0 to 0.4.1. - [Release notes](https://github.com/cwacek/python-jsonschema-objects/releases) - [Commits](https://github.com/cwacek/python-jsonschema-objects/compare/0.4.0...0.4.1) --- updated-dependencies: - dependency-name: python-jsonschema-objects dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 29 November 2021, 22:06:29 UTC |
| 7fbaab3 | mergify[bot] | 22 November 2021, 22:45:01 UTC | Merge pull request #1929 from tskit-dev/dependabot/pip/requirements/CI-complete/numpy-1.21.4 Bump numpy from 1.21.3 to 1.21.4 in /requirements/CI-complete | 22 November 2021, 22:45:01 UTC |
| 4b76080 | dependabot[bot] | 22 November 2021, 22:13:04 UTC | Bump numpy from 1.21.3 to 1.21.4 in /requirements/CI-complete Bumps [numpy](https://github.com/numpy/numpy) from 1.21.3 to 1.21.4. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](https://github.com/numpy/numpy/compare/v1.21.3...v1.21.4) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 22 November 2021, 22:35:12 UTC |
| 8e7f47b | mergify[bot] | 22 November 2021, 22:34:47 UTC | Merge pull request #1928 from tskit-dev/dependabot/pip/requirements/CI-docs/jupyter-book-0.12.1 Bump jupyter-book from 0.11.3 to 0.12.1 in /requirements/CI-docs | 22 November 2021, 22:34:47 UTC |
| 9e0bc33 | dependabot[bot] | 22 November 2021, 22:13:01 UTC | Bump jupyter-book from 0.11.3 to 0.12.1 in /requirements/CI-docs Bumps [jupyter-book](https://github.com/executablebooks/jupyter-book) from 0.11.3 to 0.12.1. - [Release notes](https://github.com/executablebooks/jupyter-book/releases) - [Changelog](https://github.com/executablebooks/jupyter-book/blob/master/CHANGELOG.md) - [Commits](https://github.com/executablebooks/jupyter-book/compare/v0.11.3...v0.12.1) --- updated-dependencies: - dependency-name: jupyter-book dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 22 November 2021, 22:23:44 UTC |
| 49801ad | mergify[bot] | 22 November 2021, 22:21:55 UTC | Merge pull request #1927 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/python-jsonschema-objects-0.4.1 Bump python-jsonschema-objects from 0.4.0 to 0.4.1 in /requirements/CI-tests-pip | 22 November 2021, 22:21:55 UTC |
| 01fe48e | dependabot[bot] | 22 November 2021, 22:12:59 UTC | Bump python-jsonschema-objects in /requirements/CI-tests-pip Bumps [python-jsonschema-objects](https://github.com/cwacek/python-jsonschema-objects) from 0.4.0 to 0.4.1. - [Release notes](https://github.com/cwacek/python-jsonschema-objects/releases) - [Commits](https://github.com/cwacek/python-jsonschema-objects/compare/0.4.0...0.4.1) --- updated-dependencies: - dependency-name: python-jsonschema-objects dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 22 November 2021, 22:12:59 UTC |
| b822b64 | Jerome Kelleher | 16 November 2021, 14:03:51 UTC | Merge pull request #1923 from jeromekelleher/rename-ped-model Rename WrightFisherPedigree -> FixedPedigree | 16 November 2021, 14:03:51 UTC |
| 4ac4477 | Jerome Kelleher | 16 November 2021, 13:37:49 UTC | Rename WrightFisherPedigree -> FixedPedigree And wf_ped to fixed_pedigree Closes #1863 | 16 November 2021, 13:53:52 UTC |
| db1a94c | Jerome Kelleher | 16 November 2021, 13:44:00 UTC | Merge pull request #1922 from jeromekelleher/remove-old-ped-ui Remove prototype Pedigree class | 16 November 2021, 13:44:00 UTC |
| b1d42d0 | Jerome Kelleher | 16 November 2021, 13:21:57 UTC | Remove prototype Pedigree class Remove ``pedigree`` arg from simulate() The following issues are either directly closed or obsoleted by this change: Closes #1187 Closes #1387 Closes #1388 Closes #1389 Closes #1390 | 16 November 2021, 13:31:24 UTC |
| fa07350 | Jerome Kelleher | 16 November 2021, 13:31:03 UTC | Merge pull request #1914 from jeromekelleher/ped-multipop Implement multiple populations in ped sim | 16 November 2021, 13:31:03 UTC |
| f45b7b3 | Jerome Kelleher | 15 November 2021, 20:25:31 UTC | Close loopholes in fixed pedigree UI This disallows the demography parameter, in particular. | 16 November 2021, 13:14:51 UTC |
| 42895e0 | Aaron Ragsdale | 15 November 2021, 05:43:43 UTC | simulation completes with continuous migration instead of split | 16 November 2021, 13:14:51 UTC |
| a4854bd | Aaron Ragsdale | 15 November 2021, 05:08:34 UTC | test with population split | 16 November 2021, 13:14:51 UTC |
| 4da8ef1 | Jerome Kelleher | 14 November 2021, 15:51:28 UTC | Implement multiple populations in ped sim | 16 November 2021, 13:14:51 UTC |
| fde7459 | mergify[bot] | 15 November 2021, 22:32:21 UTC | Merge pull request #1921 from tskit-dev/dependabot/pip/requirements/CI-complete/newick-1.3.1 Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-complete | 15 November 2021, 22:32:21 UTC |
| c055e95 | dependabot[bot] | 15 November 2021, 22:08:09 UTC | Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-complete Bumps [newick](https://github.com/dlce-eva/python-newick) from 1.3.0 to 1.3.1. - [Release notes](https://github.com/dlce-eva/python-newick/releases) - [Changelog](https://github.com/dlce-eva/python-newick/blob/master/CHANGELOG.md) - [Commits](https://github.com/dlce-eva/python-newick/compare/v1.3.0...v1.3.1) --- updated-dependencies: - dependency-name: newick dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 15 November 2021, 22:18:59 UTC |
| 0f7bcae | mergify[bot] | 15 November 2021, 22:18:15 UTC | Merge pull request #1920 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/numpy-1.21.4 Bump numpy from 1.21.3 to 1.21.4 in /requirements/CI-tests-pip | 15 November 2021, 22:18:15 UTC |
| 8a57bfc | dependabot[bot] | 15 November 2021, 22:08:06 UTC | Bump numpy from 1.21.3 to 1.21.4 in /requirements/CI-tests-pip Bumps [numpy](https://github.com/numpy/numpy) from 1.21.3 to 1.21.4. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](https://github.com/numpy/numpy/compare/v1.21.3...v1.21.4) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 15 November 2021, 22:08:06 UTC |
| 8e33190 | Jerome Kelleher | 15 November 2021, 19:46:06 UTC | Merge pull request #1913 from jeromekelleher/build_pedigree PedigreeBuilder API | 15 November 2021, 19:46:06 UTC |
| f6a23e4 | Jerome Kelleher | 14 November 2021, 11:43:16 UTC | PedigreeBuilder class | 15 November 2021, 19:09:01 UTC |
| 35bf06a | mergify[bot] | 13 November 2021, 16:04:18 UTC | Merge pull request #1866 from nikbaya/parse-fam Added parse_fam function and tests from tskit | 13 November 2021, 16:04:18 UTC |
| b607ed2 | Nik Baya | 11 October 2021, 09:30:25 UTC | Added parse_fam function and tests from tskit | 13 November 2021, 15:53:49 UTC |
| 5860d93 | mergify[bot] | 12 November 2021, 18:08:17 UTC | Merge pull request #1912 from jeromekelleher/v1.0.3-final-updates Update changelog for release | 12 November 2021, 18:08:17 UTC |
| c559464 | Jerome Kelleher | 12 November 2021, 17:42:31 UTC | Update changelog for release | 12 November 2021, 17:57:33 UTC |
| 5c58c87 | Jerome Kelleher | 12 November 2021, 17:38:04 UTC | Merge pull request #1909 from jeromekelleher/cache-pop-table-v2 Improve performance in the lots-of-simulations case | 12 November 2021, 17:38:04 UTC |
| d838347 | Jerome Kelleher | 12 November 2021, 15:41:49 UTC | Improve performance in the lots-of-simulations case | 12 November 2021, 16:11:35 UTC |
| 2dbf702 | Jerome Kelleher | 12 November 2021, 12:40:52 UTC | Merge pull request #1904 from jeromekelleher/remove-provenance-parameter-fanciness Do not use inspect to generate provenance. | 12 November 2021, 12:40:52 UTC |
| 561266a | Jerome Kelleher | 11 November 2021, 19:51:32 UTC | Do not use inspect to generate provenance. Closes #1899 | 12 November 2021, 12:14:57 UTC |
| 813f6c5 | mergify[bot] | 12 November 2021, 08:40:23 UTC | Merge pull request #1906 from petrelharp/print_rates g not f, closes #1905 | 12 November 2021, 08:40:23 UTC |
| cb0ab60 | peter | 12 November 2021, 05:38:27 UTC | g not f, closes #1905 | 12 November 2021, 08:29:58 UTC |
| cdc5d99 | mergify[bot] | 12 November 2021, 08:28:01 UTC | Merge pull request #1907 from petrelharp/updatelink Update intersphinx for stdpopsim | 12 November 2021, 08:28:01 UTC |
| e9e39d4 | peter | 12 November 2021, 06:08:27 UTC | update stdpopsim rtd link | 12 November 2021, 06:13:10 UTC |
| 4897722 | Jerome Kelleher | 10 November 2021, 10:42:52 UTC | Merge pull request #1895 from jeromekelleher/fix-full-arg-simplify Fix bug in full_arg with missing genome | 10 November 2021, 10:42:52 UTC |
| b95b9b0 | Jerome Kelleher | 09 November 2021, 12:23:31 UTC | Fix bug in full_arg with missing genome Closes #1893 | 09 November 2021, 12:26:15 UTC |
| f47a4ab | mergify[bot] | 09 November 2021, 11:52:39 UTC | Merge pull request #1894 from hyanwong/time-scale-svg Change tree_height_scale to time_scale in docs | 09 November 2021, 11:52:39 UTC |
| 433fa0a | Yan Wong | 09 November 2021, 11:07:13 UTC | Change tree_height_scale to time_scale in docs Fixes #1859 | 09 November 2021, 11:11:20 UTC |
| 6b772c2 | mergify[bot] | 08 November 2021, 22:28:06 UTC | Merge pull request #1892 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/hypothesis-6.24.2 Bump hypothesis from 6.24.0 to 6.24.2 in /requirements/CI-tests-pip | 08 November 2021, 22:28:06 UTC |
| d809669 | dependabot[bot] | 08 November 2021, 22:06:50 UTC | Bump hypothesis from 6.24.0 to 6.24.2 in /requirements/CI-tests-pip Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.24.0 to 6.24.2. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.24.0...hypothesis-python-6.24.2) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 08 November 2021, 22:19:59 UTC |
| ad52a10 | mergify[bot] | 08 November 2021, 22:16:01 UTC | Merge pull request #1891 from tskit-dev/dependabot/pip/requirements/CI-complete/pytest-xdist-2.4.0 Bump pytest-xdist from 2.3.0 to 2.4.0 in /requirements/CI-complete | 08 November 2021, 22:16:01 UTC |
| 9fbd9a1 | dependabot[bot] | 08 November 2021, 22:06:46 UTC | Bump pytest-xdist from 2.3.0 to 2.4.0 in /requirements/CI-complete Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 2.3.0 to 2.4.0. - [Release notes](https://github.com/pytest-dev/pytest-xdist/releases) - [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-xdist/compare/v2.3.0...v2.4.0) --- updated-dependencies: - dependency-name: pytest-xdist dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 08 November 2021, 22:06:46 UTC |
| e00bb39 | mergify[bot] | 01 November 2021, 22:23:48 UTC | Merge pull request #1884 from tskit-dev/dependabot/pip/requirements/CI-complete/numpy-1.21.3 Bump numpy from 1.21.2 to 1.21.3 in /requirements/CI-complete | 01 November 2021, 22:23:48 UTC |
| 6e5dc75 | dependabot[bot] | 01 November 2021, 22:06:16 UTC | Bump numpy from 1.21.2 to 1.21.3 in /requirements/CI-complete Bumps [numpy](https://github.com/numpy/numpy) from 1.21.2 to 1.21.3. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](https://github.com/numpy/numpy/compare/v1.21.2...v1.21.3) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 01 November 2021, 22:15:20 UTC |
| 8a76e10 | mergify[bot] | 01 November 2021, 22:12:28 UTC | Merge pull request #1883 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/numpy-1.21.3 Bump numpy from 1.21.2 to 1.21.3 in /requirements/CI-tests-pip | 01 November 2021, 22:12:28 UTC |
| 7453f20 | dependabot[bot] | 01 November 2021, 22:06:00 UTC | Bump numpy from 1.21.2 to 1.21.3 in /requirements/CI-tests-pip Bumps [numpy](https://github.com/numpy/numpy) from 1.21.2 to 1.21.3. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](https://github.com/numpy/numpy/compare/v1.21.2...v1.21.3) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 01 November 2021, 22:06:00 UTC |
| 4536bcd | mergify[bot] | 25 October 2021, 22:26:29 UTC | Merge pull request #1880 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/hypothesis-6.24.0 Bump hypothesis from 6.23.2 to 6.24.0 in /requirements/CI-tests-pip | 25 October 2021, 22:26:29 UTC |
| 3372c78 | dependabot[bot] | 25 October 2021, 22:06:15 UTC | Bump hypothesis from 6.23.2 to 6.24.0 in /requirements/CI-tests-pip Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.23.2 to 6.24.0. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.23.2...hypothesis-python-6.24.0) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 25 October 2021, 22:16:31 UTC |
| d8e6232 | mergify[bot] | 25 October 2021, 22:16:23 UTC | Merge pull request #1881 from tskit-dev/dependabot/pip/requirements/CI-complete/pytest-6.2.5 Bump pytest from 6.2.4 to 6.2.5 in /requirements/CI-complete | 25 October 2021, 22:16:23 UTC |
| 34f59c2 | dependabot[bot] | 25 October 2021, 22:06:23 UTC | Bump pytest from 6.2.4 to 6.2.5 in /requirements/CI-complete Bumps [pytest](https://github.com/pytest-dev/pytest) from 6.2.4 to 6.2.5. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/6.2.4...6.2.5) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 25 October 2021, 22:06:23 UTC |
| 36139f2 | mergify[bot] | 18 October 2021, 22:23:20 UTC | Merge pull request #1874 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/jsonschema-lt-5.0 Update jsonschema requirement from <4.0 to <5.0 in /requirements/CI-tests-pip | 18 October 2021, 22:23:20 UTC |
| bd114c1 | dependabot[bot] | 18 October 2021, 22:06:58 UTC | Update jsonschema requirement in /requirements/CI-tests-pip Updates the requirements on [jsonschema](https://github.com/Julian/jsonschema) to permit the latest version. - [Release notes](https://github.com/Julian/jsonschema/releases) - [Changelog](https://github.com/Julian/jsonschema/blob/main/CHANGELOG.rst) - [Commits](https://github.com/Julian/jsonschema/compare/v0.1...v4.1.0) --- updated-dependencies: - dependency-name: jsonschema dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> | 18 October 2021, 22:16:49 UTC |
| e319213 | mergify[bot] | 18 October 2021, 22:14:24 UTC | Merge pull request #1872 from tskit-dev/dependabot/pip/requirements/CI-docs/newick-1.3.1 Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-docs | 18 October 2021, 22:14:24 UTC |
| 1547a0b | dependabot[bot] | 18 October 2021, 22:06:47 UTC | Bump newick from 1.3.0 to 1.3.1 in /requirements/CI-docs Bumps [newick](https://github.com/dlce-eva/python-newick) from 1.3.0 to 1.3.1. - [Release notes](https://github.com/dlce-eva/python-newick/releases) - [Changelog](https://github.com/dlce-eva/python-newick/blob/master/CHANGELOG.md) - [Commits](https://github.com/dlce-eva/python-newick/compare/v1.3.0...v1.3.1) --- updated-dependencies: - dependency-name: newick dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 18 October 2021, 22:06:47 UTC |
| abf6d0e | mergify[bot] | 11 October 2021, 22:39:06 UTC | Merge pull request #1871 from tskit-dev/dependabot/pip/requirements/CI-complete/hypothesis-6.23.2 Bump hypothesis from 6.23.0 to 6.23.2 in /requirements/CI-complete | 11 October 2021, 22:39:06 UTC |
| f3c9f5c | dependabot[bot] | 11 October 2021, 22:31:51 UTC | Bump hypothesis from 6.23.0 to 6.23.2 in /requirements/CI-complete Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.23.0 to 6.23.2. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.23.0...hypothesis-python-6.23.2) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> | 11 October 2021, 22:31:51 UTC |
| 9119c0a | mergify[bot] | 11 October 2021, 22:31:27 UTC | Merge pull request #1852 from tskit-dev/dependabot/pip/requirements/CI-complete/pytest-cov-3.0.0 Bump pytest-cov from 2.12.1 to 3.0.0 in /requirements/CI-complete | 11 October 2021, 22:31:27 UTC |
| a0599ff | dependabot[bot] | 11 October 2021, 22:07:54 UTC | Bump pytest-cov from 2.12.1 to 3.0.0 in /requirements/CI-complete Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 2.12.1 to 3.0.0. - [Release notes](https://github.com/pytest-dev/pytest-cov/releases) - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v2.12.1...v3.0.0) --- updated-dependencies: - dependency-name: pytest-cov dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> | 11 October 2021, 22:19:34 UTC |
| 85b828a | mergify[bot] | 11 October 2021, 22:18:28 UTC | Merge pull request #1870 from tskit-dev/dependabot/pip/requirements/CI-tests-pip/hypothesis-6.23.2 Bump hypothesis from 6.17.3 to 6.23.2 in /requirements/CI-tests-pip | 11 October 2021, 22:18:28 UTC |
| 1ddcb47 | dependabot[bot] | 11 October 2021, 22:08:04 UTC | Bump hypothesis from 6.17.3 to 6.23.2 in /requirements/CI-tests-pip Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.17.3 to 6.23.2. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.17.3...hypothesis-python-6.23.2) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> | 11 October 2021, 22:08:04 UTC |
