swh:1:snp:3a699297f000109a1bc833f294a54171df990207

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Revision Author Date Message Commit Date
daf32ff update (#3641) 23 February 2021, 09:53:18 UTC
c1a87df enable basic mac tests (#3631) * add basic mac test * turns out seob did need extra files, darn * check * debug * more debug * test * huh * remove debug statements 22 February 2021, 21:34:12 UTC
72a73e4 do not hard require old emcee version, do require lalsuite (#3633) * do not hard require old emcee version * require lalsuite 19 February 2021, 13:41:06 UTC
6b5cd99 allow pycbc plot posterior to compare parameters with the nearest injection (#3639) * add option to plot closest in time injection values * typo * fixes 19 February 2021, 13:38:34 UTC
e0e4675 start moving to more standard python test infrastructure (#3629) * add pytest conifg and make test array compatible * make fs compatible with pytest * make time series compatible with pytest * fix waveform utils test * make skymax test work with pytest * fix schemes * coinc stat test fix * fix frame test for pytest * make fft test compatible with pytest * waveform tests update * can only do one fftw backend test (global state issue) * add tox configuraton file * update tox and use in test suite * update * fix * fix * this? * udpate deps * add a few more waveforms to test * check more approximants in waveform test * check more approximants in waveform test * OK, this is run twice in frame * Update test_skymax.py 17 February 2021, 17:42:34 UTC
5e5fcfe Add FromFile injection type (#3610) * add from file injection handler class * fix bugs, make api standard * allow inject to happen in place in time series * use time series inject method * add conditioning to fromfile and allow frame files to be read * code climate * fix err handling for py2.7 * change name to incoherent_from_file * fix whitespace 17 February 2021, 16:35:24 UTC
54454f4 fetch full git history so version is set correctly when building wheel on github (#3638) * fetch full git history so version is set correctly * formatting 17 February 2021, 16:20:34 UTC
056efd5 set reference time for injections, used for some projection methods (#3634) 17 February 2021, 15:58:48 UTC
f7bde78 try to make relative model independent of detector (#3622) * try to make relative model independent of detector * run black, various fixes * cc * woops 17 February 2021, 15:30:53 UTC
714c432 pycbc_make_skymap: ability to query segment database (#3636) * First pass * fix * fix * dqsegdb names * Maybe this way is better * Required subclass of MultiDetOptionAction * fix * Make it consistent with original MultiDetOptionAction behavior * Need to specify veto definer too * Ian's comment 17 February 2021, 11:53:19 UTC
fb03618 unpin h5py and fix issue in descriptor usage of compund types (#3632) * fix use of descr with metadata * unpin h5py * fixes * this too 16 February 2021, 19:36:58 UTC
812e7f1 update python compatibility metadata (#3630) 16 February 2021, 19:28:16 UTC
809771a try building wheels (#3625) * try building wheels * Update basic-tests.yml * Update basic-tests.yml * Update basic-tests.yml * Update basic-tests.yml * update * upload artefact to wheel * move pypi to separate workflow * test * fix * fix * check * test * try this * try cibuildwheel * test * test * test * test * fix 16 February 2021, 19:17:20 UTC
a1ede5b silence annoying warning messages (#3635) 16 February 2021, 14:15:25 UTC
b76742a Executable to merge HDF5 injection files (#3628) * Initialize inj merge hdf executable * Add error handling and small fixes to merge inj * Remove use of from_cli 13 February 2021, 17:39:15 UTC
9c25186 Simplify effective nsamples logic and don't try to use nacl ACLs (#3627) * simplify burn in logic to avoid accidently calculating effective samples when not burned in * always calculate acls in checkpoint method 12 February 2021, 21:39:27 UTC
b78b4e0 add test model to build posterior prob from samples (#3616) * initial commit * fixes + logging * fixes * cc * add validation script for test posterior * bounds have to be done manually * plot mod * Update analytic.py 12 February 2021, 15:00:17 UTC
5121844 Fix bug in SkyMax chisq code (#3626) 12 February 2021, 13:14:47 UTC
ade8472 Add support for legacy waveform strings (#3624) 11 February 2021, 23:36:35 UTC
c76863f fix reproducible noise bug (#3621) * fix reproducible noise bug * add unit test to check that overlapping time series are the same * update expected noise sum values * Update injection SNR to have wider tolerance 11 February 2021, 17:06:11 UTC
f843e25 Fix bug in PyCBC Live's test (#3617) 10 February 2021, 11:22:02 UTC
57abafc Changing two broken imports for ConfigParser (#3620) * Changing two broken imports for ConfigParser * Code climate issues 09 February 2021, 15:35:31 UTC
fd88cd3 gracedb upload script - add options to make output without upload (#3618) * Add ability in pycbc_upload_to_gracedb to not upload anything, to choose to use a naming convention, to check if the event already exists in gracedb before upload and to specify xml output directory 09 February 2021, 12:05:58 UTC
432146e renormalize to avoid numerical artefacts (#3613) 05 February 2021, 20:35:16 UTC
c43fcbb Reimplement PhaseTDStatistic (#3596) * Reimplement PhaseTDStatistic * Fix error in PyCBC Live due to args.statistic_files being modified by from_cli() * Switch PyCBC Live test to use the PTA statistic again * A couple fixes from Codeclimate * Add reference for coinc stat * Add safety check for coinc_lim_for_thresh() 05 February 2021, 16:53:40 UTC
0a4dc9b pycbc_optimize_snr: add support for particle swarm optimization (#3615) * Adding the PSO optimizer to pycbc_optimize_snr * Formatting changes * removing irrelevant import * Changes * Removing a redundant line * pyswarms not installed error * List to Array change * Pushed the wrong changes 05 February 2021, 16:37:28 UTC
efe5357 Pycbc_live must make output that Bayestar can use (#3611) * Fix for problem reported by Ronaldas * Can be done more straightforwardly * Add ligo.skymap dependancy * Include Bayestar * Bayestar is python3 only * Don't need to check for python3 here as well 05 February 2021, 14:49:46 UTC
b70b879 reset to dev mode (#3614) 04 February 2021, 15:00:53 UTC
853cfa1 set for release (#3612) 04 February 2021, 12:58:08 UTC
9b1fdd9 add kwarg for IFOs in reference network (#3609) * add kwarg for IFOs in reference network 03 February 2021, 15:56:08 UTC
e1197de pycbc_dtphase: fix inclination convention, UI improvements and cleanup (#3606) * pycbc_dtphase: UI improvements and cleanup * Also apply #3577 to pycbc_dtphase 03 February 2021, 09:36:07 UTC
0e91c27 try this (#3608) 02 February 2021, 12:30:52 UTC
b285fbd only accept points that have larger logl in dynesty (#3605) 29 January 2021, 14:39:06 UTC
7c0fc23 Adding the functionality of passing the approximants into BAYESTAR (#3604) * Adding the functionality of passing the approximants into BAYESTAR * indentation changes * indentation changes * indentation changes 29 January 2021, 12:01:52 UTC
3a4ed15 make sure things are ints in noise generation that need to be (#3602) 29 January 2021, 09:28:23 UTC
354018f fix plive test (#3603) * fix plive test * another rounding issue * update checker 28 January 2021, 18:46:08 UTC
692d6d6 generate lal detector type from pycbc detector (#3598) * custom detectors can now transform to lal detector * fixes * cache frdetector 27 January 2021, 16:23:57 UTC
db311ee add detectors with config file (#3597) * add detectors with config file * fixes 27 January 2021, 11:05:51 UTC
9a5b12f Add SEOBNRv4HM_ROM to dictionary of filter time lengths (#3592) * Add SEOBNRv4HM_ROM to dictionary of filter time lengths * Create new length estimator for SEOBNRv4HM waveforms. Max mode number=5 by default * Merge SEOBNRv4HM and IMRPhenomHM filter length calculation to avoid code duplication * Fix linter errors 26 January 2021, 21:48:40 UTC
0762ce4 Move interpolation into new parent class of WorkflowConfigParser (#3589) * split workflow configparser class * separate configparser into non-workflow part * import error * update * fixes * fixes * run black * various cc issues 26 January 2021, 13:38:36 UTC
320a507 Add basic unit test for coinc stat module (#3593) 26 January 2021, 09:37:32 UTC
e3ecab5 Fixing bug with FFTW, using MKL if FFTW is not available (#3595) * Fixing bug with FFTW, using MKL if FFTW is no available * Remove a blank line * Removing the set_measure_level entirely 25 January 2021, 19:16:47 UTC
23d1eb9 set fake strain options, sample rate, filter settings, etc (#3588) * set fake strain options, sample rate, filter settings, etc * update * fixes * fix * fixes * fixes * multiifo * fixes * update * add noise test * test * test * test * test * cc 25 January 2021, 13:14:50 UTC
f5221b0 MCMC history in workflow (#3590) * add support for mcmc history plots to inference workflows * fix typo * add makers, caption to mcmc history plots 22 January 2021, 15:43:30 UTC
68b4078 use relative search for flow (#3587) 21 January 2021, 14:25:33 UTC
81eaf41 add support for injection finding using hdf format (#3578) * remove old eff dist function * fix coinc snrchi to no need eff dist columns * this is ok for now * remove more effective distance / old namings * add hdf support to hdfinjfind * fix * fixes * fix up page_injections * fix typos * fixes * more fixes * fixes * fixes * open in read only mode * start * fix to inj2hdf * select hdf generation * stuff * fixes * fixes * update * fix * fixes * fix * test * fix * more fixes * fixes * one more fix * cc * fix typo 21 January 2021, 10:04:33 UTC
6230eaa PyCBC Live: use Astropy to get a more precise current GPS time (#3583) lal.GPSTimeNow() does not return the fractional part, which is a bit annoying when monitoring the O(1 s) lag of the early-warning configuration. I also simplified the logging a bit by pre-inserting the MPI rank in the format string. 14 January 2021, 18:13:15 UTC
d593203 Included an option to choose the scipy optimizer (#3582) * Included an option to choose the scipy optimizer, also including the relevant arguments that are needed to customise the optimizers. Changed the default differential_evolution parameters from (100,200) to (50,100). * Fixing an error * PR changes, argument choices, making defaults integers, changing some of the help descriptions and the name of the shgo-n argument to shgo-samples. * Changing from capitals to lower-case for clarity * Importing the shgo function 13 January 2021, 09:55:09 UTC
5349712 add effective distance as method of detector class (#3576) 12 January 2021, 13:10:21 UTC
f1f5b61 fixing fpfc inc convention (#3577) 12 January 2021, 10:33:26 UTC
9768447 add script to convert xml injection file to hdf (#3575) * make HDF inj class accessible * add script to go from xml -> hdf injection files * update 07 January 2021, 17:08:36 UTC
a347cbd add model to do numerical phase marginalization (#3484) 06 January 2021, 15:21:24 UTC
35a862a simplify strain from cli, move injections after resample (#3573) * simplify strain from cli, move injections after resample * cleanup * reorder * add option to set waveform injection sample rate * fixes * reset * fix * Update timeseries.py 06 January 2021, 14:07:13 UTC
2490255 add options to pycbc_create_injections for use with offline search codes (#3415) * inj * extend pycbc_create_injections to work for search workflows * update * move options to script * Update pycbc_create_injections 06 January 2021, 12:50:37 UTC
05cbb77 remove travis (#3574) 06 January 2021, 11:46:59 UTC
156b7e0 add method to add custom detector (#3562) * check detector name, make lalsimulation optional * add method to add custom detectors * cc * update to include x and y arm angles * alias not available on earlier astropy 18 December 2020, 18:57:21 UTC
83ee88b Update setup.py (#3571) 18 December 2020, 18:57:07 UTC
50044c4 Update setup.py (#3570) 18 December 2020, 15:42:36 UTC
12efe46 Add venv build to github actions (#3567) * Add venv build to github actions * Fix * Trying to use updated congif files * Try this * Add dummy bank file * One simple thing takes forever * Try this * Enable secure variables now * Test actually pushing * Debug * REVERT THIS * Try this? * Revert "Try this?" This reverts commit 344c3f2722f529ce7d039e8b48603c2e7a576361. * Is this it?? * Revert "REVERT THIS" This reverts commit 190b65c5d73318eeae02e1af121b17c87b9a7d77. * Put back to only run on release * Update docker_build_dist.sh 17 December 2020, 18:31:51 UTC
1a0efb6 Update pycbc_inspiral_skymax by removing redundant portions (#3566) * Updated working pycbc_inspiral_skymax * Modified part of the code 17 December 2020, 15:32:45 UTC
6f8a559 Add docker build to github actions (#3564) * It'll never work, but let's start here! * Syntax(?) * This may take a while * 111 * Shorten for testing * Trying again for the tag * One more try, think I'm there though! * Don't hardcode to the v1.16.13 tag (oops!) * Only run on master * Revert "111" This reverts commit 2717da6bf534d8c020aa75302f550f01a4038bbb. * Revert "Revert "111"" This reverts commit f74313bb7b470ed9793a9adefad8ea8f8cd027ba. * Revert "Shorten for testing" This reverts commit f7165435e15f2e833b2712ba6f3688b3bc2995fe. * Another tweak * Hmmm, try this?? * Update push_image.sh * Run on release * Don't trigger on push *and* release 17 December 2020, 14:38:19 UTC
c180bae Add more info to offline GraceDB uploads (#3569) * Add more info to offline GraceDB uploads * Add custom log message option * Reduce code duplication 17 December 2020, 14:33:46 UTC
8fb75e1 apt update (#3565) 16 December 2020, 21:16:39 UTC
bbac81c Use a single round of injections (#3561) 16 December 2020, 16:14:03 UTC
341ab8d correction of minor bugs in make_skymap and detector.py (#3563) 16 December 2020, 12:40:47 UTC
f258800 Add deviations factors for no-hair test (#3557) Co-authored-by: Miriam Cabero <miriam.cabero@ligo.org> 16 December 2020, 12:14:17 UTC
493e316 pycbc_process_sngls: subtract vetoed time from live time (#3560) * A bit of cleanup * Implement * Tom's suggestion * Fissa un insetto * Arrgs :) 16 December 2020, 09:01:31 UTC
3735f52 Cleanup PyCBC Live example (#3559) * Cleanup of PyCBC Live example * Cleanup generate_injections.py * git-ignore test output * Fix a very funny "bug" * One more little thing 15 December 2020, 14:43:16 UTC
7705aee Add getitem to singledettrigs (#3558) * Try to implement a getitem in SingleDetTriggers * Swap to main ranking functions * CodeClimating * CodeClimating * Tito's comments 14 December 2020, 18:57:24 UTC
bde15e7 Reorganizing stat.py (#3535) * First cut at breaking down stat module * Documentation * More documentation * More documentation * More documentation * Some more doc updates * More doc updating * Updating more docs * Updates * More updating * More updates * More updating stat.py * CodeClimate-ing * More codeclimating * Some more codeclimating * Update coinc code to use reorganized stat.py * Updating exes to new interface * Update eventmgr to new interface * Remove some old stuff from ranking.py * Remove old sngl_statistic concept * Updating hdf.py to new interface * Change name in exe * Fix to ranking.py * Typo fix in hdf.py * Typo in stat.py * Adding in some more missing info * Update in coinc_findtrigs * Missed a line in pycbc_plot_singles_vs_params * Rewire single_multiifo * Hook up mask_to_n_loudest properly * Add new option to sngl_minifollowup * Simplify sngls_findtrigs * Implement a stat_option_group for convenience * Add reminder FIXME * Fix typo * Fix another typo * Fix typo in fit_sngls_by_template * Fix bug in sngl_minifollowup * CodeClimating * Fix typo * Hook up pycbc_live * Fix typo * Some codeclimating * Rename coinc and single_multiifo as suggested * Live must use new interface * Typo * More typos * Fix another typo * More CodeClimating * Fix to pycbc_process_sngls * Update testing config files * Some minor renaming (remove "New") * Fix PyCBC Live interface * Make ValueErrors NotImplementedErrors * Fix nasty typo * Rename as requested by Tom * Hopefully final CodeClimating 14 December 2020, 16:01:44 UTC
503873c pycbc_process_sngls: fix error when using `--store-bank-values` (#3555) * Fix/improve pycbc_process_sngls * This should be better * Copy the live time segments too * Fine, FIXMEs are bad for the climate 11 December 2020, 10:27:48 UTC
0fdc081 add search workflow run with condor + pegasus to github actions (#3554) * Add github action test with full run of search workflow * decode issues * Update pycbc_add_statmap 10 December 2020, 13:26:49 UTC
6669b17 Add lmn_from_other_lmn conversions to list; fix bug (#3492) * Add lmn_from_other_lmn conversions to list; fix bug when inputs are floats. * Simplify bug fix. * Use formatreturn in lmns conversions. 08 December 2020, 11:55:04 UTC
1a6a9cc Allow for single float input in format_lmns. (#3531) 08 December 2020, 11:54:43 UTC
e2134ee allow relative model to be able to handle time changing antenna patterns (#3551) * add ability to change polarization factors with time for relative model * fix so one can use below 10 Hz * pass fhigh correctly * fixes * update * fixes * Update gaussian_noise.py * Update gaussian_noise.py 07 December 2020, 23:02:17 UTC
671d50a pypi on tag, testpypi on master (#3553) 07 December 2020, 20:02:49 UTC
2a85562 More removal of old coinc code (#3547) * Remove old coinc code stuff * Remove old coinc code from coincinfo * Remove old coinc capability from coinc_snrchi * Remove old coinc code from page_injtable * Remove old coinc stuff from page_recovery * Remove old coinc format from coinc_hdfinjfind 07 December 2020, 19:55:03 UTC
6962d2b add option to set detector projection method in the injection file (#3550) * remove some duplication * pass projection method * add some logging * cc * fix * Update inject.py * more fixes 07 December 2020, 17:08:08 UTC
136db01 add method option to project wave to use alternate approximations (#3549) * add method option to project wave to use alternate approximations * update docs * Update detector.py * Update detector.py 07 December 2020, 16:21:12 UTC
b4d362a add extra options to dynesty walk method (#3548) * add extra options to dynesty walk method * cc 07 December 2020, 15:21:43 UTC
cdbd8da Remove old coinc workflow (#3544) * Remove all old code and rename new code * Remove the old coinc workflow * Update workflow to rename codes 04 December 2020, 14:06:30 UTC
fe5078d Remove old coincidence code (#3545) * Remove all old coinc codes * Renaming multiifo files * Move combine_statmap + delete old code * Readd mistakenly deleted file * Readding another one * Remove ability to write legacy output in coinc_findtrigs 04 December 2020, 14:04:05 UTC
6b2c8b3 updates to github pages (#3542) * re-enable pycbc live test * try to store docs as artifact * only store artifact on python 38 * fixes * fix * update * test * fix * update * test * test * test * add deploy action * test * t1 * test * test * test * pypi upload * test * test * test * now that deploy seems to work, only do so on master * require tests to pass to deploy * ws * gh pages options * keep same old names * test * test * test * try this too * do this * fix * ok, finished 04 December 2020, 11:48:05 UTC
8bd2d8a Move hdfcoinc plotting executables to plotting (#3543) * Put all the plotting codes in plotting * Move hdfcoinc to all_sky_search 03 December 2020, 16:54:11 UTC
9cb01f1 Silence warnings from child nodes in MPI (#3381) * silence warnings from child nodes in MPI * remove redundant line 03 December 2020, 14:15:42 UTC
80005aa allow extract samples to handles nans (#3541) 03 December 2020, 12:04:22 UTC
42921ea store maxl loglr in polarization marg. model and store in brute force model (#3525) 03 December 2020, 11:56:54 UTC
0cf7c59 Add modes generator (#3483) * add generator for separate modes * address Ian's comments * remove misleading header title * more doc fixes 03 December 2020, 11:56:29 UTC
b6f11af Added SPAtmplt option in _get_imr_duration (#3540) * Added SPAtmplt approximant in _get_imr_duration function * Added SPAtmplt approximant in _get_imr_duration function * Corrected minor whitespaces and lenght issues * Fixing codeclimate issues * Codeclimate 02 December 2020, 18:03:39 UTC
691c78c pycbc_make_skymap: use state-of-art frame type and channel, remove unused variables (#3539) 02 December 2020, 13:23:56 UTC
a0c4a50 update github actions (#3538) * rename tests * update * try to be parallel * test * simp * test * ws * test * more parallel * update labels 01 December 2020, 15:14:25 UTC
29d706b Update CONTRIBUTING.md (#3536) 26 November 2020, 12:57:02 UTC
38267da Results page plot changes (#3530) * Updated the header to include the greek letter chi * Changed both the header and caption to include the greek letter 'chi' with a squared 26 November 2020, 12:49:26 UTC
f26c0ff Create python-package.yml (#3533) * Create python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml 25 November 2020, 14:59:50 UTC
8e54b49 Improve pycbc_plot_vt_ratio (#3529) * Improvements to pycbc_plot_vt_ratio * Fix * Gareth's comments 20 November 2020, 16:48:43 UTC
fd04918 rethink caching, take out for now (#3521) * rethink caching * fix indent 20 November 2020, 13:49:40 UTC
4f3ac8b unpin numpy, but avoid 1.19.0 (#3524) the issue reported in https://github.com/numpy/numpy/issues/16660 was fixed in https://github.com/numpy/numpy/pull/16666 and released as part of numpy 1.19.1, so pycbc should now be able to use those newer versions, and just avoid 1.19.0 20 November 2020, 12:50:51 UTC
255d4fb fix bug for mean mchirp m_tot in coinc inspiral table (#3528) * fix bug for mean mchirp m_tot in coinc inspiral table, update IFO info to use triggered IFOs 20 November 2020, 09:18:01 UTC
a84acd6 try adding a few second timeout (#3527) * try adding a few second timeout * update timeout * increase timeout to the max * always print error * test * try retrying * use more broadly * cc * Update test_coinc_search_workflow.sh * fix pegasus version for travis 19 November 2020, 12:10:50 UTC
e11194b fix bug in interpolator (#3523) 09 November 2020, 11:23:00 UTC
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