swh:1:snp:e6d42e6731ce66e3c09de07ac49964c03139e990
Tip revision: 26b818c8be2be41dd673d938b403c5c7562635de authored by Travis CI on 28 November 2019, 13:55:12 UTC
Deploy code docs to GitHub Pages Travis build: 305
Deploy code docs to GitHub Pages Travis build: 305
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<div class="title">TomatoOnePixel.h</div> </div>
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<a href="_tomato_one_pixel_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef TOMATO_TOMATOONEPIXEL_H</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define TOMATO_TOMATOONEPIXEL_H</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="_tomato_options_8h.html">TomatoOptions.h</a>"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> </div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span>  <span class="keyword">template</span><<span class="keyword">typename</span> MeasureType></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span>  std::map<std::string, MeasureType> calculateOnePixel(TomatoOptions<MeasureType> opts) {</div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> </div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span>  <span class="comment">// alloc and init</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span>  Calculator<MeasureType> *calculator = FactoryOfCalculators<MeasureType>::newByFactory(&opts);</div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span>  Model<MeasureType> *model = FactoryOfModels<MeasureType>::newByFactory(&opts);</div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span>  Fitter<MeasureType> *fitter = FactoryOfFitters<MeasureType>::newByFactory(&opts);</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  SignCalculator<MeasureType> *signCalculator = FactoryOfSignCalculators<MeasureType>::newByFactory(&opts);</div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  StartPointCalculator<MeasureType> *startPointCalculator = FactoryOfStartPointCalculators<MeasureType>::newByFactory(&opts);</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keywordflow">if</span> (opts.signal_magnitude.size() > 0) {</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  calculator->setNSamples(opts.signal_magnitude.size());</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  calculator->setSigMag(&(opts.signal_magnitude)[0]);</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"\nNo magnitude signal, I cannot calculate anything"</span>);</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  }</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keywordflow">if</span> (opts.signal_phase.size() > 0) {</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  calculator->setSigMag(&(opts.signal_phase)[0]);</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  }</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordflow">if</span> (opts.noise.size() > 0) {</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  calculator->setNoise(&(opts.noise)[0]);</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  }</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordflow">if</span> (opts.inversion_times.size() > 0) {</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  calculator->setInvTimes(&(opts.inversion_times)[0]);</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  }</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keywordflow">if</span> (opts.echo_times.size() > 0) {</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  calculator->setEchoTimes(&(opts.echo_times)[0]);</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  }</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">// configure calculator</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  calculator->setModel(model);</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  calculator->setFitter(fitter);</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  calculator->setSignCalculator(signCalculator);</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  calculator->setStartPointCalculator(startPointCalculator);</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  calculator->calculate();</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  std::map<std::string, MeasureType> results = calculator->getResults();</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  std::cout << <span class="stringliteral">"Results: \n"</span>;</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="keywordflow">for</span> (<span class="keyword">typename</span> std::map<std::string, MeasureType>::const_iterator it = results.begin(); it != results.end(); ++it) {</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  std::cout << it->first << <span class="stringliteral">" "</span> << it->second << <span class="stringliteral">"\n"</span>;</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  }</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  std::cout << std::endl;</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="keyword">delete</span> model;</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keyword">delete</span> fitter;</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">delete</span> signCalculator;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keyword">delete</span> startPointCalculator;</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keyword">delete</span> calculator;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> </div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keywordflow">return</span> results;</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  }</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> } <span class="comment">// namespace Ox</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="preprocessor">#endif //TOMATO_TOMATOONEPIXEL_H</span></div>
<div class="ttc" id="_tomato_options_8h_html"><div class="ttname"><a href="_tomato_options_8h.html">TomatoOptions.h</a></div></div>
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