| c803682 | Lars Bilke | 16 February 2022, 12:05:37 UTC | [mpl] Add missing include. | 16 February 2022, 12:05:37 UTC |
| 135295b | Dmitry Yu. Naumov | 16 February 2022, 10:37:24 UTC | Merge branch 'versions-overwrite' into 'master' [cmake] Added option OGS_DEPENDENCY_VERSIONS to overwrite entries in versions.json See merge request ogs/ogs!3999 | 16 February 2022, 10:37:24 UTC |
| 723c621 | Lars Bilke | 16 February 2022, 08:30:15 UTC | [cmake] Added version info output for external dependencies. | 16 February 2022, 09:57:44 UTC |
| fba2210 | Lars Bilke | 15 February 2022, 14:36:15 UTC | [web] Added docs for OGS_DEPENDENCY_VERSIONS CMake option. | 16 February 2022, 08:26:45 UTC |
| 7ed8942 | Lars Bilke | 15 February 2022, 14:31:35 UTC | [cmake] Added option OGS_DEPENDENCY_VERSIONS to overwrite entries in versions.json Syntax, e.g.: cmake .. \ -DOGS_DEPENDENCY_VERSIONS="minimum_version.petsc=3.16.2;ctest.large_runtime=120" | 16 February 2022, 08:26:45 UTC |
| 59d7719 | Dmitry Yu. Naumov | 16 February 2022, 01:45:19 UTC | Merge branch 'EmbeddedFractureRotation' into 'master' [MPL] enable fracture normal rotation with EmbeddedFracturePermeability See merge request ogs/ogs!3992 | 16 February 2022, 01:45:19 UTC |
| 1f4213f | FZill | 10 February 2022, 08:44:27 UTC | [MPL] enable fracture normal rotation with EmbeddedFracturePermeability the same as in OrthotropicEmbeddedFracturePermeability | 16 February 2022, 00:18:20 UTC |
| e72a8da | Dmitry Yu. Naumov | 16 February 2022, 00:07:03 UTC | Merge branch 'master' into 'master' Implementation of tests (ctest) for partmesh quadratic elements See merge request ogs/ogs!3996 | 16 February 2022, 00:07:03 UTC |
| 8e9c26b | Lars Bilke | 15 February 2022, 12:13:15 UTC | Merge branch 'ci-fixes' into 'master' [ci] Fixes See merge request ogs/ogs!3998 | 15 February 2022, 12:13:15 UTC |
| e57d912 | Jeremie | 13 February 2022, 20:06:15 UTC | cleaning ctest file -> removing useless comments | 15 February 2022, 10:59:56 UTC |
| 02fa4a4 | Jeremie | 13 February 2022, 19:39:03 UTC | partmesh test for quadratic line | 15 February 2022, 10:59:48 UTC |
| 621ec1a | Jeremie | 13 February 2022, 19:30:51 UTC | partmesh test for quadratic hex | 15 February 2022, 10:59:20 UTC |
| deed273 | Jeremie | 13 February 2022, 17:43:23 UTC | partmesh test for quadratic tetrahedron | 15 February 2022, 10:58:44 UTC |
| 71a2a97 | Lars Bilke | 15 February 2022, 08:22:41 UTC | [cmake,ci] Fixes for container job. | 15 February 2022, 10:54:18 UTC |
| a7cfc19 | Jeremie Lagraviere | 10 February 2022, 13:38:06 UTC | partmesh test for quadratic triangle | 15 February 2022, 10:54:03 UTC |
| 169e257 | Lars Bilke | 15 February 2022, 08:21:42 UTC | [cmake,ci] Fixes for check header job. | 15 February 2022, 08:21:42 UTC |
| 5634b3e | Dmitry Yu. Naumov | 15 February 2022, 01:04:32 UTC | Merge branch 'offline-build-ext' into 'master' Offline builds for TFEL, PETSc and LIS See merge request ogs/ogs!3995 | 15 February 2022, 01:04:32 UTC |
| 82c0a9d | Lars Bilke | 14 February 2022, 10:39:26 UTC | [web] Added usage instructions for OGS_EXTERNAL_DEPENDENCIES_CACHE. | 14 February 2022, 23:23:53 UTC |
| 58702dc | Lars Bilke | 11 February 2022, 12:49:17 UTC | [ci] Adapted jobs for caching and testing external dependencies. Creates a new cache in the package registry for the external dependencies. Currently these are: - TFEL - MFront - LIS | 14 February 2022, 23:23:53 UTC |
| 42e4110 | Lars Bilke | 11 February 2022, 12:47:42 UTC | [cmake] Added option OGS_EXTERNAL_DEPENDENCIES_DIRECTORY. In the directory archives of source code of the external dependenciens (added via ExternalProject_Add()) can be placed to enable offline builds with these dependencies. | 14 February 2022, 23:23:53 UTC |
| 23c9af9 | Dmitry Yu. Naumov | 14 February 2022, 23:21:04 UTC | Merge branch 'RemoveSC' into 'master' [PL/CT] Remove mineral equilibrium calculation in the initial stage. See merge request ogs/ogs!3947 | 14 February 2022, 23:21:04 UTC |
| 57d56cf | renchao_lu | 14 February 2022, 13:00:54 UTC | [T] update reference results. | 14 February 2022, 22:51:31 UTC |
| 43f5499 | renchao_lu | 11 February 2022, 16:48:07 UTC | [CL] special case for the first time step. | 14 February 2022, 22:51:31 UTC |
| 86d0b91 | renchao_lu | 11 February 2022, 16:47:12 UTC | [CL] remove redundant phreeqc dump file in the output folder. | 14 February 2022, 22:51:31 UTC |
| 94e9f99 | renchao_lu | 11 February 2022, 16:45:10 UTC | [PL/CT] remove speciation calculation in the initial stage. | 14 February 2022, 22:51:31 UTC |
| 122c9c2 | Lars Bilke | 14 February 2022, 19:45:55 UTC | Merge branch 'win-shared-fixes' into 'master' [ci] Fix Windows timeouts Closes #3260 See merge request ogs/ogs!3997 | 14 February 2022, 19:45:55 UTC |
| a2a714f | Lars Bilke | 14 February 2022, 19:12:01 UTC | [cmake] Re-run cmake if versions.json changes. | 14 February 2022, 19:12:01 UTC |
| 44c108b | Lars Bilke | 14 February 2022, 18:54:28 UTC | [ci] Removed BUILD_PROCESSES variable. This variable set the CMake variable OGS_BUILD_PROCESSES but since !3983 OGS_BUILD_PROCESSES and OGS_BUILD_PROCESS_XX should not be set together. The recent timeouts were because the disabling of TH2M was overriden by OGS_BUILD_PROCESSES=ON on Windows. | 14 February 2022, 19:08:40 UTC |
| 2080a6a | Lars Bilke | 14 February 2022, 15:35:00 UTC | [CMake,BL,PL] Fixes for BUILD_SHARED_LIBS=ON on Windows. | 14 February 2022, 19:08:22 UTC |
| bc066e7 | Dmitry Yu. Naumov | 11 February 2022, 23:17:00 UTC | Merge branch 'master' into 'master' [docs][benchmarks] Fixed broken jupyter notebook in "Consolidation around a point heat source" benchmark See merge request ogs/ogs!3993 | 11 February 2022, 23:17:00 UTC |
| ed3a6c3 | Dmitry Yu. Naumov | 11 February 2022, 20:30:36 UTC | Merge branch 'gh-actions' into 'master' [ci] Added msvc-code-analysis.yml for GitHub Actions. See merge request ogs/ogs!3994 | 11 February 2022, 20:30:36 UTC |
| 8f66853 | Lars Bilke | 10 February 2022, 16:13:48 UTC | [CL] Added missing include in Output.h. | 11 February 2022, 16:52:35 UTC |
| 627d6df | Lars Bilke | 10 February 2022, 11:57:11 UTC | [PL] Added missing include in CreateThermoRichardsFlowProcess.h. | 11 February 2022, 16:52:35 UTC |
| b0186a0 | Lars Bilke | 09 February 2022, 15:28:45 UTC | [ci] Added msvc-code-analysis.yml for GitHub Actions. This will run a [Visual Studio based code analysis](https://docs.microsoft.com/en-us/cpp/code-quality/quick-start-code-analysis-for-c-cpp?view=msvc-170) with GitHubs CI on master. Results can be viewed: - At https://github.com/ufz/ogs/security/code-scanning - In VS Code with the [Sarif Viewer](https://marketplace.visualstudio.com/items?itemName=MS-SarifVSCode.sarif-viewer) extension | 11 February 2022, 16:52:35 UTC |
| 52d0b9a | Feliks Kiszkurno | 10 February 2022, 13:38:57 UTC | [docs][benchmarks] Fixed broken jupyter notebook Problem 1: When running this notebook, call to GetPionts() method from vtkCommonDataModel.vtkUnstructuredGrid results in AttributeError. It was caused by input file names not following the updated ones from the ogs prj files. File names in the notebook has been updated to match current ones. Problem 2: When quered for sigma, vtkCommonDataModel.vtkUnstructuredGrid object returns 1D array instead of 2D. This leads to IndexError. There was a change in how to interact with GetArray() method in python package for vtk. All lines where this method was called have been adjusted accordingly. Now jupyter notebook runs correctly. | 11 February 2022, 08:48:07 UTC |
| c900994 | wenqing | 11 February 2022, 08:39:14 UTC | Merge branch 'update_TRM' into 'master' [TRM] Added the computation of K_uT block of the global Jacobian matrix See merge request ogs/ogs!3986 | 11 February 2022, 08:39:14 UTC |
| fc61200 | Lars Bilke | 11 February 2022, 07:53:18 UTC | Merge branch 'offline-build' into 'master' Offline builds Closes #3200 See merge request ogs/ogs!3989 | 11 February 2022, 07:53:18 UTC |
| 7712fa5 | Wenqing Wang | 10 February 2022, 15:45:48 UTC | [Test/TRM] Added a test for thermal creep analysis. The definition of the test is the same as that for TM | 10 February 2022, 18:07:05 UTC |
| eeb715e | Wenqing Wang | 18 June 2021, 14:07:03 UTC | [TRM] Added the computation of K_uT block of the Jacobian matrix | 10 February 2022, 18:06:57 UTC |
| 306b364 | Dmitri Naumov | 10 February 2022, 15:46:38 UTC | codespell; only lower case words are used; sort | 10 February 2022, 16:00:40 UTC |
| e2b80d3 | Dmitri Naumov | 10 February 2022, 15:07:42 UTC | Spelling. | 10 February 2022, 16:00:03 UTC |
| f18bc4e | Dmitri Naumov | 10 February 2022, 15:07:02 UTC | [PL/HTBHE] White space fixes; Replace tabs. | 10 February 2022, 15:59:57 UTC |
| ef34954 | Lars Bilke | 10 February 2022, 08:22:39 UTC | [ci] Added job offline configure. | 10 February 2022, 12:03:45 UTC |
| 80c2617 | Lars Bilke | 10 February 2022, 07:52:55 UTC | [cpm] Moved CPMAddPackage of metis to Dependencies.cmake | 10 February 2022, 12:03:45 UTC |
| 48e2f8f | Lars Bilke | 09 February 2022, 16:46:15 UTC | [web] How-to offline build. | 10 February 2022, 12:03:44 UTC |
| 90a45b9 | Lars Bilke | 09 February 2022, 09:48:45 UTC | [ci] Upload cpm cache snapshot as generic GitLab package. | 10 February 2022, 12:03:44 UTC |
| 1efad55 | Lars Bilke | 09 February 2022, 08:22:25 UTC | [cpm] Directly include cpm; bump to 0.34.3. Before it was downloaded from GitHub during CMake configure. | 10 February 2022, 12:03:44 UTC |
| cb178d7 | rinkk | 08 February 2022, 15:30:51 UTC | automatically adding correct extension for output file | 10 February 2022, 12:03:44 UTC |
| f2fa2e2 | Wenqing Wang | 09 February 2022, 08:58:42 UTC | [web/Test/TRM] Fixed the file link | 10 February 2022, 12:03:44 UTC |
| 11d84bb | Wenqing Wang | 09 February 2022, 08:29:18 UTC | [Web/Test/TRM] removed one word | 10 February 2022, 12:03:43 UTC |
| 6da9f4c | Feliks Kiszkurno | 08 February 2022, 12:30:59 UTC | [web] THM point heat source file names in text updated | 10 February 2022, 12:03:43 UTC |
| 45cdaac | Feliks Kiszkurno | 08 February 2022, 10:13:52 UTC | [web] THM point heat source fix link Link to the project file on Gitlba was incorrect in the article dicussing backmark "Consolidation around a point heat source". The file name was changed. Now the link is update accordingly. | 10 February 2022, 12:03:43 UTC |
| 1aaee86 | Dmitry Yu. Naumov | 09 February 2022, 21:44:20 UTC | Merge branch 'Mesh2RasterOutputExtension' into 'master' [Mesh2Raster] Automatically adding correct extension for output file See merge request ogs/ogs!3985 | 09 February 2022, 21:44:20 UTC |
| 204a584 | Dmitry Yu. Naumov | 09 February 2022, 21:19:08 UTC | Merge branch 'fix_web_TRM' into 'master' [Web/Test/TRM] Minor correction in the description of the CTF1 test See merge request ogs/ogs!3988 | 09 February 2022, 21:19:08 UTC |
| bee434b | rinkk | 08 February 2022, 15:30:51 UTC | automatically adding correct extension for output file | 09 February 2022, 21:15:53 UTC |
| 58e2675 | Wenqing Wang | 09 February 2022, 08:58:42 UTC | [web/Test/TRM] Fixed the file link | 09 February 2022, 19:27:27 UTC |
| 411ed6e | Wenqing Wang | 09 February 2022, 08:29:18 UTC | [Web/Test/TRM] removed one word | 09 February 2022, 19:27:27 UTC |
| a6095e4 | Dmitry Yu. Naumov | 09 February 2022, 19:23:51 UTC | Merge branch 'doc_benchmark_phs_fix' into 'master' Fixed broken link to Gitlab repo on page web/benchmarks/thm/point_heat_source See merge request ogs/ogs!3984 | 09 February 2022, 19:23:51 UTC |
| 240bcad | Feliks Kiszkurno | 08 February 2022, 12:30:59 UTC | [web] THM point heat source file names in text updated | 09 February 2022, 13:28:06 UTC |
| 718deab | Feliks Kiszkurno | 08 February 2022, 10:13:52 UTC | [web] THM point heat source fix link Link to the project file on Gitlba was incorrect in the article dicussing backmark "Consolidation around a point heat source". The file name was changed. Now the link is update accordingly. | 09 February 2022, 13:26:10 UTC |
| c2e332e | Lars Bilke | 09 February 2022, 09:09:54 UTC | Merge branch 'fix-exprtk-again' into 'master' [cpm] Moved exprtk from tar archive to git repo. See merge request ogs/ogs!3987 | 09 February 2022, 09:09:54 UTC |
| f626173 | Lars Bilke | 09 February 2022, 07:58:51 UTC | [cpm] Moved exprtk from tar archive to git repo. Simple tar downloads with cpm somehow mess up permissions of the cpm cache on envinfs. Created a mirror repo for exprtk at - gitlab.opengeosys.org/ogs/libs/exprtk Uploaded software heritage snapshot to its own branch. | 09 February 2022, 07:58:51 UTC |
| fc43884 | Christoph Lehmann | 09 February 2022, 07:50:26 UTC | Merge branch 'cmake-processes' into 'master' [cmake] Refactored (and fixed) processes setup logic. See merge request ogs/ogs!3983 | 09 February 2022, 07:50:26 UTC |
| b06bb1f | Lars Bilke | 08 February 2022, 14:38:32 UTC | [web] Updated docs for OGS_BUILD_PROCESSES and OGS_BUILD_PROCESS_X. | 08 February 2022, 18:43:40 UTC |
| dd6f6bd | Lars Bilke | 08 February 2022, 13:20:05 UTC | [cmake] Re-introducuce OGS_BUILD_PROCESS_XYZ. - OGS_BUILD_PROCESSES_XYZ work as before. - OGS_BUILD_PROCESSES is not a cache variable anymore but beside it works as before and also allows for multiple processes. - OGS_BUILD_PROCESSES takes precedence before (overwrites) BUILD_PROCESSES_XYZ. | 08 February 2022, 18:43:40 UTC |
| 8cc6dda | Lars Bilke | 07 February 2022, 12:20:37 UTC | [cmake] Fixes for ChemistryLib. | 08 February 2022, 18:43:40 UTC |
| 090a16f | Lars Bilke | 07 February 2022, 10:35:52 UTC | [web] Updated docs for OGS_BUILD_PROCESSES. | 08 February 2022, 18:43:40 UTC |
| 738086e | Lars Bilke | 07 February 2022, 10:23:41 UTC | [cmake] Refactored (and fixed) processes setup logic. Before: One could use the CMake variables `OGS_BUILD_PROCESSES` or `OGS_BUILD_PROCESS_XYZ` but behavior was not consistent when switching back and forth and using both methods. Also building multiple processes via `OGS_BUILD_PROCESSES` was broken. Changed: - Removed `OGS_BUILD_PROCESS_XYZ` options. - Use `OGS_BUILD_PROCESSES` with the following values: - ON -> All processes are built. - OFF -> Disable all processes. - Select a single process by name, e.g. `TH2M`. - Give a ;-separated list of processes, e.g. '"THM;TH2M"' - `OGS_BUILD_PROCESSES` can be set via ccmake or cmake-gui with a convenient dropdown, although setting multiple processes can only be done via the cli! | 08 February 2022, 18:43:40 UTC |
| 9f94c54 | wenqing | 08 February 2022, 16:05:38 UTC | Merge branch 'RM_T_init_total_stress_vapor_diffusion_latent_heat_use_MPL_vapour_stuff' into 'master' The vapour diffusion and the latent heat terms of TRM See merge request ogs/ogs!3547 | 08 February 2022, 16:05:38 UTC |
| 36aee2e | Wenqing Wang | 07 February 2022, 16:45:32 UTC | [web/Test/TRM] Added a description about the benchmark of CTF1 | 08 February 2022, 14:57:31 UTC |
| 2daf4ca | Wenqing Wang | 07 February 2022, 15:25:46 UTC | [web/Test/TRM] Added a description about the benchmark of TaskCDECOVALEX2023 | 08 February 2022, 14:57:22 UTC |
| 933ffa9 | Wenqing Wang | 04 February 2022, 15:05:27 UTC | [Test/TRM] Registered CFT1 to run | 08 February 2022, 14:48:06 UTC |
| a11ffab | aachaudhry | 20 January 2022, 15:01:47 UTC | [Test/TRM] Added a benchmark for TRM based on CTF1 experiment | 08 February 2022, 14:48:06 UTC |
| 795470b | Wenqing Wang | 26 March 2021, 16:36:15 UTC | [Ctest/TRM] Added the Task C test for the case with vapour diffusion and latent heat | 08 February 2022, 14:48:06 UTC |
| 7e69b2c | Wenqing Wang | 30 July 2021, 07:33:25 UTC | [TRM] Replaced heat_capacity with specific_heat_capacity for gas_phase->hasProperty according to issue #3176 | 08 February 2022, 14:48:06 UTC |
| 8833fa4 | Wenqing Wang | 25 February 2021, 16:22:05 UTC | [TRM] Added if(S_L < 1.0) condition for vapour diffusion computation to speed the assembly | 08 February 2022, 09:16:17 UTC |
| f5edb89 | Wenqing Wang | 25 February 2021, 16:18:45 UTC | [TRM] Added the latent heat term | 08 February 2022, 09:16:17 UTC |
| a478894 | Wenqing Wang | 25 February 2021, 16:09:49 UTC | [TRM] Added an option of using vapour heat capacity | 08 February 2022, 09:16:07 UTC |
| 310f376 | Dmitry Yu. Naumov | 07 February 2022, 20:29:18 UTC | Merge branch 'inclined_element_in_T' into 'master' [Inclined 1D/2D elements] Part 2: HeatConduction process Closes #3253 See merge request ogs/ogs!3972 | 07 February 2022, 20:29:18 UTC |
| 6837b5d | Wenqing Wang | 02 February 2022, 15:12:29 UTC | [Test/T] Add a test with inclided elements | 07 February 2022, 19:59:19 UTC |
| efb938e | Wenqing Wang | 02 February 2022, 15:02:36 UTC | [T] Enabled to handle inclined element | 07 February 2022, 19:59:19 UTC |
| 55eea67 | Wenqing Wang | 03 February 2022, 06:33:55 UTC | [Test/T] Increased the comparison tolerance of a test from 1.e-15 to 1.e-14 | 07 February 2022, 19:59:19 UTC |
| 0e807a3 | Wenqing Wang | 02 February 2022, 15:56:52 UTC | [Test/T] Updated some reference files due to the change of the heat flux output | 07 February 2022, 19:59:19 UTC |
| 1f39484 | Wenqing Wang | 02 February 2022, 15:11:30 UTC | [Test/T] Use new name of heat flux | 07 February 2022, 19:59:19 UTC |
| 16e23d6 | Wenqing Wang | 02 February 2022, 14:11:35 UTC | [T] Removed computeSecondaryVariableConcrete | 07 February 2022, 19:59:19 UTC |
| 8ce79fc | Wenqing Wang | 02 February 2022, 14:07:36 UTC | [T] Enabled vector output of heat flux | 07 February 2022, 19:59:19 UTC |
| 642aeea | Dmitry Yu. Naumov | 07 February 2022, 13:41:34 UTC | Merge branch 'RefactorOgsMainFunction' into 'master' Refactor the ogs main function (new classes CommandLineArgumentParser and Simulation) See merge request ogs/ogs!3977 | 07 February 2022, 13:41:34 UTC |
| 4a8e368 | Thomas Fischer | 04 February 2022, 07:41:49 UTC | [A/AppLib] Fwd. CLI args to Simulation::initializeDataStructures(). | 07 February 2022, 12:55:07 UTC |
| 1551deb | Thomas Fischer | 04 February 2022, 07:37:51 UTC | [A/CLI] CommandLineArgumentParser: New CLI args. | 07 February 2022, 12:55:07 UTC |
| 8049bc0 | Thomas Fischer | 04 February 2022, 07:34:44 UTC | [A/CLI] Fwd. CLI args to Simulation::initializeDataStructures(). | 07 February 2022, 12:55:07 UTC |
| 563c7de | Thomas Fischer | 04 February 2022, 05:26:15 UTC | [A/AppLib] Separate Simulation impl. from declaration. | 07 February 2022, 12:55:07 UTC |
| 0f5a766 | Thomas Fischer | 04 February 2022, 05:12:44 UTC | [A/CLI] Separate declaration / definition of class CommandLineArgumentParser. | 07 February 2022, 12:55:07 UTC |
| a849c14 | Thomas Fischer | 28 January 2022, 12:19:05 UTC | [A/CLI] Rename ogs to simulation. | 07 February 2022, 12:55:07 UTC |
| 28c30b2 | Thomas Fischer | 28 January 2022, 12:04:45 UTC | [A/CLI/ogs.cpp] Get optional test definition from simulation. | 07 February 2022, 12:55:07 UTC |
| aec5dd6 | Thomas Fischer | 28 January 2022, 12:01:59 UTC | [A/CLI/ogs.cpp] Cleanup header files. | 07 February 2022, 12:55:07 UTC |
| f78d53a | Thomas Fischer | 28 January 2022, 12:01:30 UTC | [A/ApplicationsLib/Simulation] Make test definition an optional. | 07 February 2022, 12:55:07 UTC |
| 73b62c4 | Thomas Fischer | 26 January 2022, 10:23:40 UTC | [A/CLI] Mv code from closed scopes to methods of class Simulation. | 07 February 2022, 12:55:07 UTC |
| 5c31e32 | Thomas Fischer | 27 January 2022, 11:27:39 UTC | [A/CLI] Move code for CLI parsing into own class in separate file. | 07 February 2022, 12:55:07 UTC |
| bb9a37c | Thomas Fischer | 18 January 2022, 08:40:29 UTC | [A/CLI] Split large scope in several blocks. The first block is for the initialization of the data structures. In the second block the simulation calculations are performed. | 07 February 2022, 12:55:07 UTC |
| 6afafc9 | Thomas Fischer | 14 January 2022, 15:27:18 UTC | [A/CLI] Mv ProjectData decl. out of large block. Later on, the aim is to split the large block in several smaller blocks. | 07 February 2022, 12:55:07 UTC |
