9e84ce757a0a7e99dadda0ccfab706e0 *DESCRIPTION
556617030eeb5b4c892f19e16cc05020 *NAMESPACE
f0edb95616fb6bf4d2a6ba25683e5388 *NEWS
10d93360e7de3469e7cf401272de0604 *R/buildTree.R
f7afee6599cb85dc6b8e6ba4e54849c1 *R/checkTreeValidHelp.R
ab2e50a5c337779ad9a47f7cf98888f5 *R/checkTreeValidity.R
baab7d5792cf3b9c64934385345c5dc0 *R/compareTwoDataSets.R
35d5a233ccb280726f75ef5cc87b6207 *R/createAndPlot.R
8761ac9e8f2a3ba6494eaf6d5a2d5a07 *R/createTrees.R
c537ef2d9122276c2aa7b3726dc3ff89 *R/displayLegend.R
5a8e42b730441b6174e7f30c2eb667db *R/formatData.R
ec9d9575c77f0db78705114d33e4a30e *R/generateTree.R
f3e3152a42948cf84eae29dcc2d3121a *R/getBranchSizes.R
8459cc53a5de84c9c1569ac1a7161130 *R/getMLEandLoglike.R
c9007eb825feb591489d729e59ee5315 *R/getTaxaDepth.R
905fb7b6ed2dac44598073dd43eb8487 *R/mergeDataSets.R
7e25bf73330183ab5ce3ecaeaf244f37 *R/pairedCompareTwoDataSets.R
83c330138324e74815e75e2ce7652480 *R/plotTree.R
d2290218a07807acd61ab1b51a80db5f *R/plotTreeDataMDS.R
a2097b8f04c52d951305d07eb1a867b3 *R/removeUnclass.R
c871735262deb94feedd1605f232bc9a *R/subsetData.R
3b8f919b098c6c9dea428fdb6c95e182 *R/transformHMPTreetoHMP.R
25cf07e9af82f2bae790fcff52862d4c *R/transformHMPtoHMPTree.R
651a1ef593f8429a3877e03b7a1083ce *R/traverseTree.R
8a1a28725bb9646c9e7dea2e351a8ea3 *R/traverseTreeHelp.R
71f14bd77f09d3583f431d693008c6b6 *R/trimToTaxaLevel.R
bafa39efbe840a1473dd2ebce275e3bf *build/vignette.rds
ef13844a781c473edc105ef6ad0e2610 *data/saliva.rda
9871933a151c3f5e5e55bb4a304122db *data/stool.rda
184f18fbed9c23cfb548c569f2f3d2e5 *data/throat.rda
f305be040e3d9a7c6b02a8237c32194b *inst/doc/Creating-Data-From-RDP-Tutorial.Rnw
12527658371fd02bd0b50a532fbb9407 *inst/doc/Creating-Data-From-RDP-Tutorial.pdf
caf6d6de306dd2d9c805b53ea9ac8a64 *man/HMPTrees-internal.Rd
fc0f28a9717f449604d0b70c04018971 *man/HMPTrees-package.Rd
aebf03f88100aa5207e1235c70a7b0aa *man/checkTreeValidity.Rd
02fb40e61e58d46e9f2b700c9e1c4a76 *man/compareTwoDataSets.Rd
ab68267680331c98e3a7e1baa98445da *man/createAndPlot.Rd
d453efb204b3d52f76e9e5297da998c0 *man/createTrees.Rd
44319b19f40250446e47cb94b0d01d98 *man/displayLegend.Rd
67a8b3eea39681064033e9aa5d6d43b1 *man/formatData.Rd
100a95fa0227e25f8b6d634380f829f7 *man/generateTree.Rd
bf856c992103cca4970c36305bfd70e8 *man/getMLEandLoglike.Rd
461fa1a3ad74e54f231dc64410745316 *man/mergeDataSets.Rd
52c1941d7994a8628bdfcaae54643477 *man/pairedCompareTwoDataSets.Rd
02e21c45d2b28f36c68d188c7be4e29a *man/plotTree.Rd
5e709c7e563c26ace0dc81c9249e7c3b *man/plotTreeDataMDS.Rd
c1bb45ae4ae342835905ae40b2e844ab *man/saliva.Rd
74a2228b7c01ada22ed4ffb4dcbd09dd *man/stool.Rd
6789fdbf997ca2bf6e93e4fd32482607 *man/throat.Rd
0e69ef08f05b5ffa400fdd636b01858d *man/trimToTaxaLevel.Rd
f305be040e3d9a7c6b02a8237c32194b *vignettes/Creating-Data-From-RDP-Tutorial.Rnw