4180ae7e11cbf491547ef0936cb93086 *DESCRIPTION
38c23c2c10c2466eef45585f6d56868e *R/checkTreeValidity.R
293785ea1942abb1c952748343e81596 *R/checkValidHelp.R
b381283fdd5e89659039b1639810a115 *R/compareTwoDataSets.R
d4c0f8e16d80a6f1b2c7f9bb2bc01139 *R/createAndPlot.R
e334d3de5ce9020d168578c9fdc4bd8f *R/createTrees.R
911c692920a95ad8c7ed421ef41da67d *R/displayLegend.R
a91f0693bcb6a7903533b4250fefb03a *R/formatData.R
22f8b8021a67dde6b19f18cee9746ce1 *R/generateTree.R
9435221a2f344447e796c4c5e48310e0 *R/getBranchSizes.R
5f08baa0299d462ddd0fee91b3b023ca *R/getMLEandLoglike.R
293830466d7ccd0a68a0a34efa7e23ca *R/getRelations.R
ee9f68b83103b4b922ae4801c937341e *R/getTaxaDepth.R
062a37547cc9ea277f3b6df3de5bf4ec *R/getTopXPhylum.R
cc2d62f4d4d6b0de03546c0bc694cb42 *R/helpRelations.R
db6a1dfc3c20429b445b28ab489337c1 *R/mergeDataSets.R
cf428a016b16b6b68fdcc932da5b435d *R/plotTree.R
368e907fdd4a33f91aba7fcc27eadd58 *R/plotTreeDataMDS.R
5dcfea6545ccfb5e01f8d23bd41da7cc *R/rowMatch.R
c6a1781325f4f15d68a15f346c159ade *R/transformHMPTreetoHMP.R
8fe5c9b8ad61055dcf2951e0745c12a1 *R/transformHMPtoHMPTree.R
34364e8bd318473700c0f9235096c12f *R/traverseHelp.R
3a2802dae8126987ed079ce753eeeda4 *R/traverseTree.R
0d56193fd24747159ab7cec1186cca8d *R/trimToTaxaLevel.R
4ed4cd869039d1e65aaf95295898a1bd *data/saliva.rda
21517f3b3b34bbc18bb1572717258d23 *data/stool.rda
1073f4b16969d55f99dc72196f55f23a *data/throat.rda
a0f7579b05139b1099638596be836484 *man/HMPTrees-internal.Rd
1f9c70a3e7e12036dfaf98c898c78b0e *man/HMPTrees-package.Rd
bd5cd85694984293d55f4732da1cbff2 *man/checkTreeValidity.Rd
33f54b733048d30cba06b1f2d3f35b72 *man/compareTwoDataSets.Rd
01b3263440c000f65c6a54b8ad801725 *man/createAndPlot.Rd
c7eb326ac563a961cffad3f3125bce56 *man/createTrees.Rd
2bbfbc7b3311e0938be5ea24bf3eed60 *man/displayLegend.Rd
d48ae5d160f7822b9ccb1171cff33bcb *man/formatData.Rd
430469941a24681ae073a97d2555d5c0 *man/generateTree.Rd
ebbb632b8d49662c48c9a07635500d9f *man/getMLEandLoglike.Rd
f4306f063992df2b65a36d12a40819df *man/mergeDataSets.Rd
563be871bd8219eceacefa7f691957f5 *man/plotTree.Rd
726f3a347224dfc63fde5251f8c08161 *man/plotTreeDataMDS.Rd
d6088d37d2e9399f5858249c7a2bdb6a *man/saliva.Rd
d99bbc9f544e44dd80c0e283cd7a28c8 *man/stool.Rd
b8e25b672d78b3a3b0d8a1702307e2a3 *man/throat.Rd
4c960680e1af65c0561c8acf80065d7d *man/transformHMPTreetoHMP.Rd
ef9db7785ebea6276ef8c49afa54642c *man/transformHMPtoHMPTree.Rd
efc53a3bef2bddb7c5c060a385c725c9 *man/trimToTaxaLevel.Rd