ff810381b175b295970c5b706d6bf4de *DESCRIPTION
9f03faf9050bd5ddf3d3c1833207bb0a *NAMESPACE
57679970d38c17ac9c95478b9313aed0 *R/attractorsToLaTeX.R
0e037f01fa88a832cb43d3a9d5e9f5dd *R/binarizeTimeSeries.R
ec2c323ef07745ec7b89339aa5a4433c *R/chooseNetwork.R
7c81eb3530ee3fede7742d9729de77c1 *R/edgeDetector.R
c7fb28f26b946db5f54730be6d492516 *R/fixGenes.R
b96b8b67effb0c2d55a29cc6f19323bd *R/generateRandomNKNetwork.R
9597332899ac07b3145917fafc789d15 *R/generateRandomStartStates.R
2c872695c4fa33c90c6de2431f19e689 *R/generateState.R
5650d6d8b6da147a254e9681a291a90b *R/generateTimeSeries.R
4db8f585d2e3477db95a8db2720a2e4c *R/getAttractorSequence.R
140740c1ba1d08eea3e27e9da3637f48 *R/getAttractors.R
08764b48eccb7812f9c333c122d1e689 *R/getBasinOfAttraction.R
cc663c2b39dc50cd45bbb83d7cd36d44 *R/getPathToAttractor.R
9637fc5badfec905a1d865d5e65d3839 *R/getStateSummary.R
a45f67785e1846f8482c9ff10debd95c *R/getTransitionProbabilities.R
d31c9950c1a42c23eb5585c23e98bb25 *R/getTransitionTable.R
fcedd10ae785f0be113ea1ea2e66b091 *R/helpers.R
8e0fdeac893b8bfc8837c9d94e9ed1f9 *R/loadBioTapestry.R
f1e4da50ef5dd5ea083b8fcd060b3f77 *R/loadNetwork.R
aa19fa3aaa70362a5d5d18bb114c245c *R/loadSBML.R
817f7c8476aa6b32443be62885e3c72d *R/markovSimulation.R
d3dc1ab8d227e4775adfaee9973732e9 *R/parseBooleanFunction.R
75a4ff7284740122216a79cd7f9508e1 *R/perturbNetwork.R
6e8d3d79095844cf1fb6cb7c75750cfe *R/perturbTrajectories.R
b3c6b0765a241bb1d4e4a150f47d3d8b *R/plotAttractors.R
20fd67145509cae5e9701fcfa93e210c *R/plotNetworkWiring.R
9f64811ec997a7aa2fc262725ae6f7e5 *R/plotPBNTransitions.R
da8b7350847b5c4715a67c34fe829f53 *R/plotSequence.R
3e92ac93c5ce1934d542b3eb7985aa44 *R/plotStateGraph.R
1d3e5b86636a5b54035d7062285e34e4 *R/print.AttractorInfo.R
bd5b5182c9a4321e0051be7f40bcbf6f *R/print.BooleanNetwork.R
09ac08c8cb2ef098c96a86de93e5ad7c *R/print.BooleanStateInfo.R
b4ce1c3d7c29f9b9d92a5428ace77b0a *R/print.MarkovSimulation.R
55d7e998f889cf528bef3d68edb38562 *R/print.ProbabilisticBooleanNetwork.R
2a6921108f7704c4949bcd96b82a2cb0 *R/print.SymbolicBooleanNetwork.R
1138169d9ef31f04670bbc2544524e4c *R/print.SymbolicSimulation.R
0adfd6c034e0bf75c16d351c4f2e52f6 *R/print.TransitionTable.R
78216cfe9045ded3a90b43edb6e0d21f *R/reconstructNetwork.R
00623749adde58c327566c72a67d4027 *R/saveNetwork.R
8db261cf9b75f737bc6ca7f49c67dbd0 *R/scanStatistic.R
a9cfa06573f8eeb0aefa2329c59689aa *R/sequenceToLaTeX.R
5877e9963cac94f7dc2b245079826450 *R/simplifyNetwork.R
c8a4ab49f15e1e8888d4bd132e1d9271 *R/simulateSymbolicModel.R
595c68d880e16c31046313f648cc34c6 *R/stateTransition.R
ea0fbe49b283f4f0c073de77ab78fbaf *R/symbolicToTruthTable.R
42daa52bc14fc6918004e35203e07907 *R/testNetworkProperties.R
568159a3609b108c45ba2c39728fa6ce *R/toPajek.R
47bc51ada1eefa53c11e0171a589bc8b *R/toSBML.R
dab752c2c82ef4e5e93224ad6934208c *R/truthTableToSymbolic.R
811f12cc71a25cbf23ade7eb93bb2162 *R/zeta.R
bcc619228d6f025ff8cd6e2a77f73def *build/vignette.rds
6323b9a68ede50d320ceffa342711988 *data/cellcycle.rda
2162a3dfd9f29f06223413307dd177c8 *data/examplePBN.rda
d58578f1cc7da58378f1617a6d8bb021 *data/igf.rda
8919de127f7ee2391900468a36c5dcd4 *data/yeastTimeSeries.rda
62409980eecaca8e52f1d495f499d6bd *inst/CITATION
313ba5036165b50314bb2ec3372150f6 *inst/NEWS.Rd
d9ed6c7ca4c6531245a460d64ef5281b *inst/doc/BoolNet_package_vignette.R
14df741a8cec94d3f34e4077bd665062 *inst/doc/BoolNet_package_vignette.Snw
c73445a79cd51131c37d631bb93be53a *inst/doc/BoolNet_package_vignette.pdf
fcb0ddc4a26eb5062f05b55032e5b151 *inst/doc/cellcycle.txt
27bccf40991bbe762bc274cbd7874f40 *inst/doc/example.btp
5fb48be5bfbec8ac6e8a2a6dadcc317e *man/BoolNet-package.Rd
67caa758b9f663491e69a3c18f4ee36f *man/attractorsToLaTeX.Rd
3461bfd43dd57a88d01d83df611f95c0 *man/binarizeTimeSeries.Rd
3623b2fe85476af5336cf7e220c1d60e *man/cellcycle.Rd
036eacac86ee9bfe4f821ab5ef7fb616 *man/chooseNetwork.Rd
7914c426e149300046dfce5ca9517777 *man/examplePBN.Rd
98af6630df76a0232c66ebb0bc8837d7 *man/fixGenes.Rd
642d27c47da308a31eaf78400173f2f4 *man/generateRandomNKNetwork.Rd
6b7e62a87a818acd4982332b9aa254e1 *man/generateState.Rd
38c0aa52a0ee9f8bf97e8067c77fcde5 *man/generateTimeSeries.Rd
201ec0e62a545f6a444f6caf689b3b03 *man/generationFunctions.Rd
35e00e1d48235e6deda56da6a5aa5758 *man/getAttractorSequence.Rd
72c6a2e78ad4bb47cc35d7d00c2a8c64 *man/getAttractors.Rd
9a35b1240af9834c41698983a18a6304 *man/getBasinOfAttraction.Rd
942d670fcd5de88dc007005fdab638c6 *man/getPathToAttractor.Rd
86d4773284835753fd35078d27d620d9 *man/getStateSummary.Rd
87053d20084edd33f1c2fe2c2a4f9787 *man/getTransitionProbabilities.Rd
8489c176c7be92a3e98d55b44e8c7aa9 *man/getTransitionTable.Rd
ce766f16cf9e6a7a2bb9e883e8eaeb61 *man/igf.Rd
45e936129f9b2587bf185102395c260d *man/loadBioTapestry.Rd
ed4cbad9b4579b8a7c6b0cc2f4a936b1 *man/loadNetwork.Rd
2707e6dd84d360637b761470776337d8 *man/loadSBML.Rd
c859af507471ba3da30d304d90622a83 *man/markovSimulation.Rd
1592f64ef13d306cbc4110ae2ce8f604 *man/perturbNetwork.Rd
196308b14d4adf113e9a71211c9018cf *man/perturbTrajectories.Rd
9484e9a7865353afdf2e1e79363890ff *man/plotAttractors.Rd
c7904f48e78584e4ad19f1f88c897398 *man/plotNetworkWiring.Rd
2638a35d79eddce77b3cac8e6cd995b9 *man/plotPBNTransitions.Rd
246effe1700433b4173c699150802ee9 *man/plotSequence.Rd
4fd22acacd58b14152afe03320b8600f *man/plotStateGraph.Rd
5f379a9e2b4a9a418d8b665af74757be *man/print.AttractorInfo.Rd
e0b2b98da9c074e4e30dd73d57dae9da *man/print.BooleanNetwork.Rd
b480ee06d8d8c2ade8ad0b5c89a13a7e *man/print.MarkovSimulation.Rd
d03ef8645e4d3ad814798e882167aa8d *man/print.ProbabilisticBooleanNetwork.Rd
0b0de959a1efcef7fb7cbee820e80353 *man/print.SymbolicSimulation.Rd
d6e7961146750c9b36106a8d280a1c09 *man/print.TransitionTable.Rd
98f8fc35b62488d9311508f3cba92992 *man/reconstructNetwork.Rd
a00de398f679b032e7455478b427b4b5 *man/saveNetwork.Rd
193c5cf928939ccffccce788a27154af *man/sequenceToLaTeX.Rd
5944620706adac67972e04b0eea2627f *man/simplifyNetwork.Rd
235d5f7bb9ebf1c349f20912107b4dd9 *man/simulateSymbolicModel.Rd
ce79e445196a6f65daca2a2cdce0aa88 *man/stateTransition.Rd
d3d63606a7c4517c4faa078a43d9bbdd *man/symbolicToTruthTable.Rd
ebae90dc72087715f94107aee6eb6536 *man/testNetworkProperties.Rd
a5db19da3fb5103170c96cad7d537b74 *man/toPajek.Rd
205d9b5aa773edc1124a0ae58d5e7a0e *man/toSBML.Rd
a43aad3b0dd5fff7a95a9075bdfdaa2e *man/truthTableToSymbolic.Rd
7ffc48740e826cbf5c56c11fb8dfe9df *man/yeastTimeSeries.Rd
da975f995fc5f2ef57170b3d3ba53178 *src/Makevars.win
56a684219ad834529e4c4c6e9deb9ef2 *src/attractor_info.c
8b25f0694d6279bba2e28c947e304524 *src/attractor_info.h
036826c4ebee96d5885709f10efbd391 *src/attractor_search_interface.c
8e4fdfd767d86b61f15c5c245e8dba77 *src/boolean_network.h
8bcc0d40927949da8d50a8b116fc45d9 *src/common.c
156f9c56866c9e7707594d1f0faf101b *src/common.h
3ae7901969630cf0f1c12ac9024957eb *src/picosat.c
2c29607ee624151f84ac09f55535010e *src/picosat.h
a869a6a74b9c0a1c4c796003c1251d60 *src/probabilistic_boolean_network.c
686e443cfcfa3f597ea866bc25c356e7 *src/random.h
58be262aa256be87d8d8cf3cf63abfb3 *src/reconstruct_network.c
22bc54f938607f08f72f1fbbf7289b7c *src/sat_search.c
0d6515ab8ff7605f16ca10eb5c6fc9e4 *src/sat_search.h
351d201ca2f926bdd1b5f4694de19902 *src/statespace_search.c
c085761b2f853545febe7170a3715eb2 *src/statespace_search.h
4d4e389c0ff626a5e0db88416991e94e *src/symbolic_network.c
dbbf4848847aefb8b756d749519bdf1d *src/symbolic_network.h
a92bedbf4bd0438dab983bd4713b6456 *src/symbolic_simulator.c
460b4e88a7af5ba2c60231ca9f3644c8 *src/uthash.h
14df741a8cec94d3f34e4077bd665062 *vignettes/BoolNet_package_vignette.Snw
45d3f76bd49d22f8d6e0ad5cc2a14c62 *vignettes/BoolNet_package_vignette.bib
cbc02d945670e5381418720262b10955 *vignettes/biotap_initval.png
530409792bed5d5a53140e85554b9d61 *vignettes/biotap_logic.png
d4a2fcf1d0a873afde1c021019649014 *vignettes/biotap_model.png
e02e5fea28346a3d8162b4feaa6ffb05 *vignettes/biotap_sim_properties.png
d6aa77a2d43960ebb98c288990d3fe41 *vignettes/pajek.png