9b5fbf2d4531ed7b0e44fe508b6ed7a0 *DESCRIPTION
a3f97565777d3e7d6fa0b6525b37c9dc *NAMESPACE
43dae0a83fdb00cd9a55693b0cc39f95 *R/attractorsToLaTeX.R
0e037f01fa88a832cb43d3a9d5e9f5dd *R/binarizeTimeSeries.R
6f0fd254b9797de877b13cdef6bedc44 *R/chooseNetwork.R
8fedce95c2aedd72c7ab350dbb27b413 *R/edgeDetector.R
5bdd9330e2e924f6673be5d18c25366d *R/fixGenes.R
34e979b0b7116e8b05c10af080b5ac4e *R/generateRandomNKNetwork.R
a4996d93c018a412a00add98e5f4ad4e *R/generateState.R
f80b8bfabc624f82d5ae2856605a4702 *R/generateTimeSeries.R
2883b41dbb100377bb988e9074f7eb13 *R/getAttractorSequence.R
d916f1db165444d374d7517776bed77e *R/getAttractors.R
c243d4d818c7faac5eb71d3f79a67cc9 *R/getBasinOfAttraction.R
de7218e6ee192b7d2e93d3621a37fcbb *R/getPathToAttractor.R
1ab4ae1e73f453d85512103d077667d6 *R/getStateSummary.R
a45f67785e1846f8482c9ff10debd95c *R/getTransitionProbabilities.R
e6d1b2c4f16abcb5970173c7f7ef280a *R/getTransitionTable.R
a1bb3168d41f445e1f9924d3762f44e2 *R/helpers.R
8517f43a094682b71a547df8b3fa3f50 *R/loadBioTapestry.R
95c250e7e7c6c4063f1a39e106cb8295 *R/loadNetwork.R
40ef9d4e8ab8c66d0135d134ca321e91 *R/loadSBML.R
6cf426b55ed4fda07a34c45609d5db0c *R/markovSimulation.R
025678125cdb1ee32fde3531d4f09511 *R/parseBooleanFunction.R
41c21fcab38d434e2de877d79d435b59 *R/perturbNetwork.R
b5f0676cbb35c28ddd5f7a0ae21aa3f8 *R/plotAttractors.R
dddbf2166ac469e0f2b8bf81864a0ebb *R/plotNetworkWiring.R
a04b208788b419584a8af04ec41c6b6c *R/plotPBNTransitions.R
4a09e6bf5f14248ae4c74f5ca7b5ef87 *R/plotSequence.R
54fa924a8c5a3494fb1faf7f9bfbf6ac *R/plotStateGraph.R
3c84f69a1018a2b15123bc4a3e7b6296 *R/print.AttractorInfo.R
bd5b5182c9a4321e0051be7f40bcbf6f *R/print.BooleanNetwork.R
09ac08c8cb2ef098c96a86de93e5ad7c *R/print.BooleanStateInfo.R
8d47aaddb2e451a4202110a5fc029782 *R/print.MarkovSimulation.R
6cc5b06ed784cbb901ebefed27370285 *R/print.ProbabilisticBooleanNetwork.R
2943627a6599f050826dd4b02ef3b722 *R/print.TransitionTable.R
e6e6011809d5058819fb8b34a6d17b21 *R/reconstructNetwork.R
76191c54fc190fe45442b1883e5208b1 *R/saveNetwork.R
f9055460bc6913f7919a51f6371164d9 *R/scanStatistic.R
ff5dff17d01495d7cbf4858210828a9d *R/sequenceToLaTeX.R
418ca33fa4586b1532e67a765f66b600 *R/simplifyNetwork.R
f6271d6e195aaf18a117a60a889b92f7 *R/stateTransition.R
faee255056f4ad4607a43c46e7c9101b *R/testNetworkProperties.R
ed4c8d17bbef54aaca1917bfadc8b6ee *R/toPajek.R
48af2a5511d3a07c63763a38b280474d *R/toSBML.R
98f1852c4cdae662fb15a186a90c98bb *R/zeta.R
6323b9a68ede50d320ceffa342711988 *data/cellcycle.rda
2162a3dfd9f29f06223413307dd177c8 *data/examplePBN.rda
8919de127f7ee2391900468a36c5dcd4 *data/yeastTimeSeries.rda
62409980eecaca8e52f1d495f499d6bd *inst/CITATION
0ca38459a7dcc5fb388ed08f3964a578 *inst/NEWS.Rd
38c801eb4cb67c7db0b85ccf88dffc7d *inst/doc/BoolNet_package_vignette.Snw
66c98ffd50ae052da7458c3abcf685ed *inst/doc/BoolNet_package_vignette.bib
e39e530112bd68df29664886cdf23575 *inst/doc/BoolNet_package_vignette.pdf
ec64012a9d59619ca10f7ec773a5ecc5 *inst/doc/attractor1.pdf
462943d1a5e8c9e9e2c8016b1123ae4c *inst/doc/attractor2.pdf
182f17338132fdac2a557f97ce9d5161 *inst/doc/basinsize.pdf
cbc02d945670e5381418720262b10955 *inst/doc/biotap_initval.png
530409792bed5d5a53140e85554b9d61 *inst/doc/biotap_logic.png
d4a2fcf1d0a873afde1c021019649014 *inst/doc/biotap_model.png
e02e5fea28346a3d8162b4feaa6ffb05 *inst/doc/biotap_sim_properties.png
27bccf40991bbe762bc274cbd7874f40 *inst/doc/example.btp
6205344ebd21ac18f56cd007d41db949 *inst/doc/indegree.pdf
278b58af8e047bce2f4da4ec56c43102 *inst/doc/indegree_kl.pdf
d6aa77a2d43960ebb98c288990d3fe41 *inst/doc/pajek.png
6281e84e63e0fa1cfd41266f7fc642de *inst/doc/pbntransitions.pdf
afa4bc65fe533ee9ffdeb8808caa76c1 *inst/doc/piecewisestategraph.pdf
79f46d5824454f2f2cef54b3709962a5 *inst/doc/robustness.pdf
68193e412ead38e34addce0b1e505f4a *inst/doc/sequence.pdf
9cdaa6def60436caa3b3ac2b0e918a0c *inst/doc/stategraph.pdf
99c3cfee3a4d14bcf7dd0b4aac27916b *inst/doc/wiring.pdf
d86a9a94edb2c17de545b0d529d440ad *inst/doc/wiring_biotap.pdf
2eac09c70788cd15fa665ecdd46e55b4 *man/BoolNet-package.Rd
d678fa847d47f0d430737f1ced2a43dd *man/attractorsToLaTeX.Rd
3461bfd43dd57a88d01d83df611f95c0 *man/binarizeTimeSeries.Rd
3623b2fe85476af5336cf7e220c1d60e *man/cellcycle.Rd
56915bfdbf214e7ad18124c230328d2c *man/chooseNetwork.Rd
7914c426e149300046dfce5ca9517777 *man/examplePBN.Rd
d3024f8953aba3e68e0fd2b87a3a284b *man/fixGenes.Rd
3e6c5fd8b2c5d5e0cb0b8857afe0941e *man/generateRandomNKNetwork.Rd
b39f6dcecac5916ae668e3baf5f7d575 *man/generateState.Rd
aabaee93d2141f24082e785cccda9c67 *man/generateTimeSeries.Rd
61132c105569a7a91b8ff6c212135dc8 *man/getAttractorSequence.Rd
a09cf023a3e880e303eba0220488a216 *man/getAttractors.Rd
37525a1c61ad4c97c6457c5b1462e662 *man/getBasinOfAttraction.Rd
b3982cdc1b1cac176a41e01db04cecfa *man/getPathToAttractor.Rd
7ff770bb1a6cd2f607879b7440ee5bee *man/getStateSummary.Rd
87053d20084edd33f1c2fe2c2a4f9787 *man/getTransitionProbabilities.Rd
d13b00988178bf5916afd5d42420a78e *man/getTransitionTable.Rd
217722d582556d2afd2b56634f060ae4 *man/loadBioTapestry.Rd
024e7ba158ac6f60eb944d98373df59e *man/loadNetwork.Rd
fbdbe70e7ec6d7c06014899c6f43ab3c *man/loadSBML.Rd
e6d111802bb3f2c9809112102307a6b0 *man/markovSimulation.Rd
ded95935c60346bd4a76529c5938992d *man/perturbNetwork.Rd
9e9a654367d61c64698e6c841e142c88 *man/plotAttractors.Rd
afcdb5a1246882b58b770edbbba7940c *man/plotNetworkWiring.Rd
9ba39e20433ffd9cfa5c29a6293a9ae2 *man/plotPBNTransitions.Rd
a0eef2e9b91f5b51ad4ef0aea6faa2f6 *man/plotSequence.Rd
0be64e2169945202d9fd359434eee4c6 *man/plotStateGraph.Rd
5f379a9e2b4a9a418d8b665af74757be *man/print.AttractorInfo.Rd
e0b2b98da9c074e4e30dd73d57dae9da *man/print.BooleanNetwork.Rd
b480ee06d8d8c2ade8ad0b5c89a13a7e *man/print.MarkovSimulation.Rd
d03ef8645e4d3ad814798e882167aa8d *man/print.ProbabilisticBooleanNetwork.Rd
d6e7961146750c9b36106a8d280a1c09 *man/print.TransitionTable.Rd
a04d2632a4f3c1af824705713bc20a3d *man/reconstructNetwork.Rd
ab6fec99e4c1b186071b291307f64f37 *man/saveNetwork.Rd
14472cad7962ca4e700ff559f8d55b35 *man/sequenceToLaTeX.Rd
d67ace4fa49e6b2821310c36ac491a5e *man/simplifyNetwork.Rd
68e41359ee75eed8688523aa904b961f *man/stateTransition.Rd
839cb9abac605660c7f5c0eabac3385f *man/testNetworkProperties.Rd
0a34bb4024f6cc4f71efcafcae40fc00 *man/toPajek.Rd
e5149163eb73190448023911b498586b *man/toSBML.Rd
7ffc48740e826cbf5c56c11fb8dfe9df *man/yeastTimeSeries.Rd
586878cd39a3a7929a4af662a767dacb *src/boolean_network.c
5e6f2933daf6b58c94e740e16fd026cc *src/common.c
955d4becfadeba658ad6ea6ccdc2ca6f *src/common.h
675c81ba1bf5f01462da08a7daae556b *src/probabilistic_boolean_network.c
686e443cfcfa3f597ea866bc25c356e7 *src/random.h
31cc7ec675c0399d69b068e501a2bbd7 *src/reconstruct_network.c
460b4e88a7af5ba2c60231ca9f3644c8 *src/uthash.h