https://github.com/microbiome/microbiome
Tip revision: 4202f6bef33d585d148b0251294a159383c245f4 authored by Leo Lahti on 04 August 2023, 09:24:31 UTC
Merge pull request #216 from plasde/patch-1
Merge pull request #216 from plasde/patch-1
Tip revision: 4202f6b
| File | Mode | Size |
|---|---|---|
| abundances.R | -rwxr-xr-x | 1.6 KB |
| add_besthit.R | -rw-r--r-- | 2.6 KB |
| add_refseq.R | -rw-r--r-- | 1.2 KB |
| aggregate_rare.R | -rwxr-xr-x | 961 bytes |
| aggregate_taxa.R | -rwxr-xr-x | 4.6 KB |
| alpha.R | -rwxr-xr-x | 9.2 KB |
| associate.R | -rwxr-xr-x | 10.3 KB |
| baseline.R | -rwxr-xr-x | 1.5 KB |
| bimodality.R | -rwxr-xr-x | 10.4 KB |
| boxplot_abundance.R | -rwxr-xr-x | 3.3 KB |
| boxplot_alpha.R | -rw-r--r-- | 3.9 KB |
| check_phyloseq.R | -rwxr-xr-x | 573 bytes |
| collapse_replicates.R | -rwxr-xr-x | 1.7 KB |
| core.R | -rwxr-xr-x | 1.8 KB |
| core_abundance.R | -rwxr-xr-x | 1.5 KB |
| core_members.R | -rwxr-xr-x | 1.8 KB |
| coverage.R | -rwxr-xr-x | 1.3 KB |
| data.R | -rwxr-xr-x | 3.4 KB |
| default_colors.R | -rwxr-xr-x | 1.5 KB |
| divergence.R | -rwxr-xr-x | 2.1 KB |
| dominance.R | -rwxr-xr-x | 6.5 KB |
| dominant.R | -rwxr-xr-x | 617 bytes |
| evenness.R | -rwxr-xr-x | 6.6 KB |
| firstlib.R | -rwxr-xr-x | 4.9 KB |
| gktau.R | -rwxr-xr-x | 2.9 KB |
| group_age.R | -rwxr-xr-x | 1.6 KB |
| group_bmi.R | -rwxr-xr-x | 2.5 KB |
| heat.R | -rwxr-xr-x | 6.1 KB |
| hotplot.R | -rwxr-xr-x | 2.8 KB |
| inequality.R | -rwxr-xr-x | 1.4 KB |
| intermediate_stability.R | -rwxr-xr-x | 9.8 KB |
| is.phyloseq.R | -rwxr-xr-x | 74 bytes |
| is_compositional.R | -rwxr-xr-x | 796 bytes |
| log_modulo_skewness.R | -rwxr-xr-x | 2.2 KB |
| low_abundance.R | -rwxr-xr-x | 1.3 KB |
| map_levels.R | -rwxr-xr-x | 1.8 KB |
| merge_taxa.R | -rwxr-xr-x | 1.7 KB |
| meta.R | -rwxr-xr-x | 631 bytes |
| microbiome-package.R | -rwxr-xr-x | 641 bytes |
| neat.R | -rwxr-xr-x | 2.6 KB |
| neatsort.R | -rwxr-xr-x | 7.1 KB |
| overlap.R | -rwxr-xr-x | 1.1 KB |
| plot_atlas.R | -rwxr-xr-x | 2.1 KB |
| plot_composition.R | -rwxr-xr-x | 8.9 KB |
| plot_core.R | -rwxr-xr-x | 8.1 KB |
| plot_density.R | -rwxr-xr-x | 2.9 KB |
| plot_frequencies.R | -rwxr-xr-x | 1.2 KB |
| plot_landscape.R | -rwxr-xr-x | 8.4 KB |
| plot_regression.R | -rwxr-xr-x | 8.1 KB |
| plot_taxa_prevalence.R | -rwxr-xr-x | 5.7 KB |
| plot_tipping.R | -rwxr-xr-x | 3.3 KB |
| potential_analysis.R | -rwxr-xr-x | 14.1 KB |
| prevalence.R | -rwxr-xr-x | 2.5 KB |
| psmelt2.R | -rw-r--r-- | 1.9 KB |
| quiet.R | -rwxr-xr-x | 844 bytes |
| rare.R | -rwxr-xr-x | 1.5 KB |
| rare_abundance.R | -rwxr-xr-x | 940 bytes |
| rare_members.R | -rwxr-xr-x | 1.2 KB |
| rarity.R | -rwxr-xr-x | 3.6 KB |
| read_biom2phyloseq.R | -rwxr-xr-x | 2.4 KB |
| read_csv2phyloseq.R | -rwxr-xr-x | 2.2 KB |
| read_mothur2phyloseq.R | -rwxr-xr-x | 3.4 KB |
| read_phyloseq.R | -rwxr-xr-x | 1.9 KB |
| read_taxtable.R | -rwxr-xr-x | 198 bytes |
| readcount.R | -rwxr-xr-x | 418 bytes |
| remove_samples.R | -rwxr-xr-x | 1.1 KB |
| remove_taxa.R | -rwxr-xr-x | 1.0 KB |
| richness.R | -rwxr-xr-x | 2.7 KB |
| spreadplot.R | -rwxr-xr-x | 2.0 KB |
| summarize_phyloseq.R | -rwxr-xr-x | 2.3 KB |
| taxa.R | -rwxr-xr-x | 667 bytes |
| tibble_utilities.R | -rw-r--r-- | 2.5 KB |
| time_normalize.R | -rwxr-xr-x | 975 bytes |
| time_sort.R | -rwxr-xr-x | 1.7 KB |
| timesplit.R | -rwxr-xr-x | 1.5 KB |
| top.R | -rwxr-xr-x | 2.2 KB |
| top_taxa.R | -rwxr-xr-x | 461 bytes |
| transform.R | -rwxr-xr-x | 7.9 KB |
