0d9019d | Dmitri Naumov | 11 October 2021, 09:45:03 UTC | [MeL] Use array of nodes instead of heap alloc arr The problem with the heap allocated array is that the ownership is not clear. In the MeshEditing.Prism2Quad unit-test the array of nodes was used after it has been already deleted after element construction. Using array is safer and avoids unnecessary heap alloctions. | 11 October 2021, 09:45:49 UTC |
0119183 | Lars Bilke | 11 October 2021, 09:04:49 UTC | Update CHANGELOG.md [ci skip] | 11 October 2021, 09:04:49 UTC |
187df32 | Dmitry Yu. Naumov | 10 October 2021, 11:54:14 UTC | Merge branch 'ClangFormat' into 'master' Clang format See merge request ogs/ogs!3835 | 10 October 2021, 11:54:14 UTC |
9c73e96 | Dmitri Naumov | 10 October 2021, 10:46:07 UTC | [T] clang-format. | 10 October 2021, 11:11:53 UTC |
8922b83 | Dmitri Naumov | 10 October 2021, 10:45:14 UTC | [PL] clang-format. | 10 October 2021, 11:11:53 UTC |
bd05703 | Dmitri Naumov | 10 October 2021, 10:44:31 UTC | [ParL] clang-format. | 10 October 2021, 10:49:50 UTC |
898b6e3 | Dmitri Naumov | 10 October 2021, 10:43:55 UTC | [MeL] clang-format. | 10 October 2021, 10:49:50 UTC |
4e95cfb | Dmitri Naumov | 10 October 2021, 10:43:13 UTC | [MGTL] clang-format. | 10 October 2021, 10:49:50 UTC |
abcd7c0 | Dmitri Naumov | 10 October 2021, 10:42:54 UTC | [MaL] clang-format. | 10 October 2021, 10:49:50 UTC |
55dcb5a | Dmitri Naumov | 10 October 2021, 10:42:30 UTC | [MatL] clang-format. | 10 October 2021, 10:49:48 UTC |
16f5215 | Dmitri Naumov | 10 October 2021, 10:41:42 UTC | [GL] clang-format. | 10 October 2021, 10:48:40 UTC |
429a45e | Dmitri Naumov | 10 October 2021, 10:41:05 UTC | [CL] clang-format. | 10 October 2021, 10:48:40 UTC |
f54d158 | Dmitri Naumov | 10 October 2021, 10:39:44 UTC | [App] clang-format. | 10 October 2021, 10:48:40 UTC |
4ffdd41 | Dmitry Yu. Naumov | 09 October 2021, 20:29:15 UTC | Merge branch 'ImplementMapBasedAccessInGroupBasedParameter' into 'master' [ParamLib] Use map instead of vector in GroupedBasedParameter. Closes #3180 See merge request ogs/ogs!3833 | 09 October 2021, 20:29:15 UTC |
8c62075 | Thomas Fischer | 08 October 2021, 11:43:24 UTC | [ParamLib] Use map instead of vector in GroupedBasedParameter. In parallel simulations not every domain needs to contains all MaterialIDs. Using a vector is thus unpractical, sometimes memory will be wasted and it is also error prone. Hence, a map solves these issues. | 09 October 2021, 13:20:36 UTC |
5fec8b1 | Thomas Fischer | 08 October 2021, 12:20:23 UTC | [T] Test group based param. in SteadyStateDiffusion. | 09 October 2021, 12:04:53 UTC |
1568b83 | Dmitry Yu. Naumov | 08 October 2021, 21:59:29 UTC | Merge branch 'FixBrooksCoreySaturationDerivative' into 'master' [MPL] Fix Brooks-Corey saturation derivative. See merge request ogs/ogs!3816 | 08 October 2021, 21:59:29 UTC |
a8826ab | Dmitri Naumov | 08 October 2021, 21:37:46 UTC | [MeL] Fix xdmf.org links. | 08 October 2021, 21:37:46 UTC |
797774a | Norbert Grunwald | 08 October 2021, 09:04:13 UTC | [T/2PhasePP] Update cTest config to fit the new test version. Removed old reference file. | 08 October 2021, 21:30:59 UTC |
7d22b39 | Norbert Grunwald | 08 October 2021, 08:57:01 UTC | [T/2PhasePP] Update McWorther reference files due to new time resolution. Results correspond to the previous version, slight differences can be explained by the higher temporal resolution. | 08 October 2021, 21:30:59 UTC |
2e1593c | Norbert Grunwald | 08 October 2021, 08:54:24 UTC | [T/2PhasePP] Changed temporal resolution of McWorther test Also changed the convergence criterion and the maximum number of non-linaer iterations | 08 October 2021, 21:30:59 UTC |
396c02b | Norbert Grunwald | 06 October 2021, 12:17:41 UTC | [T/MPL] New SaturationBrooksCorey test based on numerical derivatives. | 08 October 2021, 21:30:59 UTC |
8e4fdd4 | Norbert Grunwald | 06 October 2021, 12:16:15 UTC | [MPL] d2Value returns 0 if capillary pressure is below entry pressure. | 08 October 2021, 21:30:59 UTC |
3126735 | Dmitri Naumov | 30 September 2021, 17:34:52 UTC | [MPL] Fix Brooks-Corey saturation derivative. | 08 October 2021, 21:30:59 UTC |
00c9b6d | Dmitry Yu. Naumov | 08 October 2021, 16:56:31 UTC | Merge branch 'fix_LIE' into 'master' Fixed a bug in LIE Closes #3173 See merge request ogs/ogs!3834 | 08 October 2021, 16:56:31 UTC |
c98be45 | Wenqing Wang | 08 October 2021, 15:27:35 UTC | [LIE/Test] Enabled one test | 08 October 2021, 15:27:35 UTC |
b910bb2 | Wenqing Wang | 08 October 2021, 15:26:18 UTC | [LIE] Removed `.head(GlobalDim).noalias()` in HydroMechanicsLocalAssemblerFracture | 08 October 2021, 15:26:18 UTC |
9485418 | Wenqing Wang | 08 October 2021, 14:55:24 UTC | [LIE/] Use explicit type for gravity_vec in HydroMechanicsLocalAssemblerFracture | 08 October 2021, 14:55:24 UTC |
6fd6bbe | Wenqing Wang | 08 October 2021, 14:28:52 UTC | [LIE] Use ShapeFunction::DIM in ShapeMatrixPolicyType in HydroMechanicsLocalAssemblerFracture | 08 October 2021, 14:28:52 UTC |
88fbc90 | Dmitry Yu. Naumov | 08 October 2021, 12:31:40 UTC | Merge branch 'inclined_element' into 'master' [Inclined 1D/2D elements] Part 1: Realised in LiquidFow See merge request ogs/ogs!3632 | 08 October 2021, 12:31:40 UTC |
b3045a8 | Dmitry Yu. Naumov | 08 October 2021, 12:28:15 UTC | Merge branch 'StorageCapacity' into 'master' [PL/CT] Incorporate the effect of change of storage capacity due to mineral dissolution-precipitation reaction See merge request ogs/ogs!3810 | 08 October 2021, 12:28:15 UTC |
8e09c17 | renchao_lu | 06 October 2021, 12:31:16 UTC | [T] update benchmark results. | 08 October 2021, 11:56:33 UTC |
7dc8926 | renchao_lu | 30 September 2021, 12:20:09 UTC | [PL/CT] compute A and rhs. | 08 October 2021, 11:56:33 UTC |
6550559 | renchao_lu | 30 September 2021, 12:19:39 UTC | [PL/CT] assemble global matrix K. | 08 October 2021, 11:56:33 UTC |
98de414 | renchao_lu | 30 September 2021, 12:17:58 UTC | [PL/CT] incorporate the effect of change of storage capacity. | 08 October 2021, 11:56:33 UTC |
9276e0a | renchao_lu | 30 September 2021, 12:14:27 UTC | [PL/CT] move forward into postSpeciationCalculation. | 08 October 2021, 11:56:33 UTC |
ae99503 | Lars Bilke | 08 October 2021, 09:06:19 UTC | [web] Fix Win cli downloads for master. Thanks to @fzill for reporting! | 08 October 2021, 09:06:19 UTC |
4d3cbd1 | Wenqing Wang | 02 August 2021, 14:33:08 UTC | [web/benchmark] Added a description about the newly added benchmarks for the simulation with inclined elements. | 07 October 2021, 21:11:23 UTC |
96be3d9 | Wenqing Wang | 30 July 2021, 15:09:44 UTC | [LiquidFlow/Ctest] Added a test about 1D elements in 3D space. | 07 October 2021, 21:11:23 UTC |
fa98f37 | Wenqing Wang | 30 July 2021, 12:54:25 UTC | [LiquidFlow/Ctest] Added a test about fracture in 3D. | 07 October 2021, 21:11:23 UTC |
f1e1ad1 | Wenqing Wang | 04 June 2021, 15:08:32 UTC | [Ctest/LiquidFlow] Added two benchmarks with inclined 2D mesh. | 07 October 2021, 21:11:23 UTC |
a684d45 | Wenqing Wang | 21 May 2021, 15:05:17 UTC | [LiquidFlow] Replaced dimension with space dimension in LiquidProcess.cpp | 07 October 2021, 21:11:23 UTC |
7033622 | Wenqing Wang | 30 July 2021, 09:47:35 UTC | [LiquidFlow] Use explicit type for some matrix and vector definition. | 07 October 2021, 21:11:23 UTC |
214a6e2 | Wenqing Wang | 19 May 2021, 15:26:13 UTC | [LiquidFlow] Considered the local assembly in inclined element | 07 October 2021, 21:11:23 UTC |
1f7ce43 | Wenqing Wang | 29 July 2021, 15:08:09 UTC | [NumLib] Added DimVectorType in EigenFixedShapeMatrixPolicy | 07 October 2021, 21:11:23 UTC |
1eca8a4 | Wenqing Wang | 14 July 2021, 15:13:15 UTC | [NumLib] Added a default value of the template argument of ShapeMatrixPolicyType | 07 October 2021, 21:11:23 UTC |
8632368 | Wenqing Wang | 19 May 2021, 13:46:02 UTC | [LiquidFlow] Added a member of element_rotation_matrices to LiquidFlowData | 07 October 2021, 21:11:23 UTC |
20886e2 | Wenqing Wang | 19 May 2021, 13:13:38 UTC | [UnitTest] Added a test for getElementRotationMatrices with mesh without inclined element | 07 October 2021, 21:11:23 UTC |
c6abf92 | Wenqing Wang | 19 May 2021, 11:30:39 UTC | [UnitTest] Added a test for getElementRotationMatrices with 2D mesh | 07 October 2021, 21:11:23 UTC |
37d27f6 | Wenqing Wang | 18 May 2021, 15:10:16 UTC | [UnitTest] Added a test for getElementRotationMatrices with 3D mesh | 07 October 2021, 21:11:23 UTC |
013d8bd | Wenqing Wang | 18 May 2021, 10:30:08 UTC | [MeshLib] Added a description of getElementRotationMatrices | 07 October 2021, 21:11:23 UTC |
eae3943 | Wenqing Wang | 14 May 2021, 12:52:01 UTC | [MeshLib] Added a utility of getElementRotationMatrices | 07 October 2021, 21:11:23 UTC |
46b7f1a | Dmitry Yu. Naumov | 07 October 2021, 18:49:16 UTC | Merge branch 'RemoveQtDependencyFromGeoTools' into 'master' Remove Qt dependency from MoveGeometry and TriangulatePolyline See merge request ogs/ogs!3829 | 07 October 2021, 18:49:16 UTC |
1836e43 | Thomas Fischer | 28 September 2021, 09:16:58 UTC | [A/U/GeoTools] Remove Qt dependency from tools. | 07 October 2021, 18:12:51 UTC |
8c71329 | Thomas Fischer | 28 September 2021, 09:17:09 UTC | [A/U/GeoTools] Substitute Qt dependent code by boost. | 07 October 2021, 18:12:51 UTC |
315f0eb | Dmitry Yu. Naumov | 07 October 2021, 18:10:06 UTC | Merge branch 'FixBugInHeatConductionProcess' into 'master' Fix HeatConductionProcess parallel (PETSc) build. See merge request ogs/ogs!3831 | 07 October 2021, 18:10:06 UTC |
657d2a1 | Thomas Fischer | 07 October 2021, 11:46:18 UTC | [T/HeatConduction] Test for parallel heat conduction. | 07 October 2021, 15:20:28 UTC |
9505d11 | Thomas Fischer | 07 October 2021, 11:18:26 UTC | [PL/HeatConduction] Finalize the global mats and vec. assembly. After the assembly of matrices and vectors it is required to finalize them. This fixes a bug in parallel version of ogs. | 07 October 2021, 15:20:28 UTC |
5e0bec1 | Tobias Meisel | 07 October 2021, 13:35:01 UTC | Merge branch 'update-xdmf' into 'master' [cpm] Update xdmf to fix CMake warnings. See merge request ogs/ogs!3830 | 07 October 2021, 13:35:01 UTC |
62167a5 | Lars Bilke | 07 October 2021, 09:18:07 UTC | cmake-format | 07 October 2021, 09:58:35 UTC |
086c190 | Lars Bilke | 07 October 2021, 09:17:23 UTC | [cpm] Update xdmf to fix CMake warnings. See https://gitlab.opengeosys.org/ogs/xdmflib/-/commit/2e2439f4c867e872bc3e646b01f6e081667c4b02. | 07 October 2021, 09:58:34 UTC |
7d226dc | Lars Bilke | 07 October 2021, 07:57:31 UTC | [web] Added note on using a different compiler. | 07 October 2021, 07:57:31 UTC |
155530d | Tom Fischer | 07 October 2021, 04:33:47 UTC | Merge branch 'FixPetscMatrixOptions' into 'master' [MaL/PETSc] Fix order of matrix options. Closes #3202 and #3203 See merge request ogs/ogs!3817 | 07 October 2021, 04:33:47 UTC |
9bdc4d6 | Jörg Buchwald | 05 October 2021, 18:27:21 UTC | add test using PETSc requiring mat_type seqaij for ILU | 06 October 2021, 15:40:20 UTC |
8f2b4fa | Dmitri Naumov | 01 October 2021, 18:28:49 UTC | [MatL/PETSc] Set default matrix type to 'aij'. This covers both, the serial and parallel cases: seqaij and mpiaij. The latter matrix type will not work for serial cases---#3203. | 06 October 2021, 15:40:20 UTC |
b96e476 | Dmitri Naumov | 01 October 2021, 15:48:17 UTC | [MatL/PETSc] Remove unnecessary commented code. From the documentation https://petsc.org/release/docs/manualpages/Vec/VecSetUp.html: "For basic use of the Vec classes the user need not explicitly call VecSetUp(), since these actions will happen automatically." | 06 October 2021, 15:40:20 UTC |
78580bc | Dmitri Naumov | 01 October 2021, 15:46:25 UTC | [MaL/PETSc] Fix order of matrix options. The matrix type set through command line arguments was overriden by an extra call. Changing the orders assigns the command line options higher priority than the default aij matrix type. | 06 October 2021, 15:40:20 UTC |
cbb921f | Lars Bilke | 06 October 2021, 11:54:42 UTC | Merge branch 'fix-hdf-mpi-check' into 'master' [cmake] Fixed hdf5 mpi check when using CPM for hdf5. See merge request ogs/ogs!3827 | 06 October 2021, 11:54:42 UTC |
e5d2a18 | Lars Bilke | 06 October 2021, 10:33:42 UTC | [cmake] Fixed hdf5 mpi check when using CPM for hdf5. Check should executed only for system-wide hdf5 installs. When CPM is used the correct hdf5 configuration is guaranteed. | 06 October 2021, 10:33:42 UTC |
c1f8aab | Dmitry Yu. Naumov | 06 October 2021, 10:05:54 UTC | Merge branch 'ImproveResetPropertiesInPolygonalRegionTool' into 'master' [A/U/ME] Add switch argument to tool ResetPropertiesInPolygonalRegion. See merge request ogs/ogs!3818 | 06 October 2021, 10:05:54 UTC |
c555e84 | Thomas Fischer | 06 October 2021, 08:28:54 UTC | [MGTL/MeshEditing] Change for windows build. | 06 October 2021, 08:52:56 UTC |
a225d03 | Thomas Fischer | 05 October 2021, 12:33:52 UTC | [A/U] Test for switch any_of in tool ResetPropertiesInPolygonalRegion. | 06 October 2021, 08:52:56 UTC |
62eb306 | Thomas Fischer | 01 October 2021, 20:11:20 UTC | [web] Document the new switch of the tool ResetPropertiesInPolygonalRegion. | 06 October 2021, 08:52:56 UTC |
2c88301 | Thomas Fischer | 14 September 2021, 12:37:44 UTC | [A/U/ME] Add switch arg to tool. A part of an element is inside of a polygon if at least one node is in the (convex) polygon. Sometimes it is useful to forster that all nodes of an element have to be in the polygon. With the new implemented switch argument the user can choose the behaviour of the algorithm. | 06 October 2021, 08:52:56 UTC |
1ec62b9 | Dmitry Yu. Naumov | 06 October 2021, 08:45:51 UTC | Merge branch 'SmallFixes' into 'master' Several independent changes See merge request ogs/ogs!3822 | 06 October 2021, 08:45:51 UTC |
fe8a423 | Dmitry Yu. Naumov | 06 October 2021, 07:59:33 UTC | Merge branch 'THM_TRM_HeatFluxOutput' into 'master' THM/TRM Add heat flux output. See merge request ogs/ogs!3758 | 06 October 2021, 07:59:33 UTC |
3f6d340 | Dmitri Naumov | 04 October 2021, 16:06:22 UTC | [MGTL] clang-format some lambdas. | 06 October 2021, 07:37:29 UTC |
607acc4 | Dmitri Naumov | 29 September 2021, 09:19:27 UTC | [PL/HM] Rename tpl-arg for consistency w other pcs | 06 October 2021, 07:36:42 UTC |
9a24250 | Dmitri Naumov | 22 September 2021, 20:21:56 UTC | [MeL] Remove unused getNumberOfGlobalBaseNodes(). | 06 October 2021, 07:36:42 UTC |
649fbb4 | Dmitri Naumov | 20 September 2021, 13:47:59 UTC | [MeL/IO] Make readMeshFromFileSerial private. Move implementation to cpp in anonymous namespace. | 06 October 2021, 07:36:42 UTC |
60f3352 | Dmitri Naumov | 31 August 2021, 07:53:23 UTC | [T/TRM] A2; Add HeatFlux to the comparisons. | 06 October 2021, 07:31:33 UTC |
99a11f7 | Dmitri Naumov | 27 August 2021, 11:27:15 UTC | [T/THM] Update A2 references. Only HydraulicFlow and NodalForces mismatched after a fix of their output in previous commit. Adding HeatFlux to comparisons and relax tolerances for now corrected NodalForces. | 06 October 2021, 07:31:33 UTC |
c49a8d5 | Dmitri Naumov | 27 August 2021, 10:31:59 UTC | [PL/THM/TRM] Add heat flux output. | 06 October 2021, 07:31:33 UTC |
eb3c7b8 | Dmitry Yu. Naumov | 05 October 2021, 22:02:49 UTC | Merge branch 'MeshLibElementCleanup' into 'master' [MeL] Move neighbour information from Node to Mesh. See merge request ogs/ogs!3819 | 05 October 2021, 22:02:49 UTC |
2a483a6 | Thomas Fischer | 09 July 2021, 15:15:16 UTC | [MeL] Mv neighbor information from Node to Mesh. | 05 October 2021, 20:56:20 UTC |
e8af0af | Dmitry Yu. Naumov | 05 October 2021, 20:55:05 UTC | Merge branch 'FixPadilla_NaCl1' into 'master' [RCT] re-enable the PadillaNaCl1 test case Closes #3178 See merge request ogs/ogs!3826 | 05 October 2021, 20:55:05 UTC |
bc4b9b2 | Lars Bilke | 05 October 2021, 17:54:49 UTC | Merge branch 'FixMemLeakInMeshLib' into 'master' Fix memory leak in MeshLib Closes #3195 See merge request ogs/ogs!3824 | 05 October 2021, 17:54:49 UTC |
dac1701 | renchao_lu | 05 October 2021, 15:21:32 UTC | [T] relax absolute tolerance. | 05 October 2021, 15:21:32 UTC |
cc0251f | renchao_lu | 05 October 2021, 15:20:49 UTC | [T] re-enable the Padilla_NaCl1 test case. | 05 October 2021, 15:20:49 UTC |
e35cda5 | Dmitry Yu. Naumov | 05 October 2021, 14:34:16 UTC | Merge branch 'PhaseField' into 'master' Energy output by computeEnergy has been updated. See merge request ogs/ogs!3806 | 05 October 2021, 14:34:16 UTC |
3166ab9 | KeitaYoshioka | 05 October 2021, 12:18:19 UTC | [PL/PhF] Fix energy computation in parallel sims. The summation of the output energies and the pressure work was incorrectly computed at the partition boundaries. | 05 October 2021, 12:19:31 UTC |
96465f6 | KeitaYoshioka | 29 September 2021, 11:35:35 UTC | [PL/PhF] Correct energy computation for AT1/AT2. The computation is different for the two models. | 05 October 2021, 12:16:10 UTC |
8bd0e13 | Thomas Fischer | 04 October 2021, 13:23:29 UTC | [MGTL] Use Line or Line3 constr. instead of Element::clone. | 05 October 2021, 11:26:07 UTC |
4e7fecf | Thomas Fischer | 04 October 2021, 13:09:36 UTC | [MeL] Fix mem leak in TemplateElement constructor. | 05 October 2021, 11:26:07 UTC |
1c0b1e8 | Dmitry Yu. Naumov | 05 October 2021, 10:55:07 UTC | Merge branch 'container-cpu-target' into 'master' [ci] Better cpu target handling (`march` / `mtune`) See merge request ogs/ogs!3820 | 05 October 2021, 10:55:07 UTC |
5b636d6 | Lars Bilke | 05 October 2021, 06:58:14 UTC | [ci] Fix TH2M switch. Cannot add a comment between CMake arguments (hides all remaining args). | 05 October 2021, 06:58:14 UTC |
c904f62 | Lars Bilke | 04 October 2021, 09:26:45 UTC | [cmake] Removed option OGS_ENABLE_AVX2. | 04 October 2021, 09:29:47 UTC |
6544777 | Lars Bilke | 04 October 2021, 08:34:42 UTC | [ci] Bump container cpu-target to ivybridge (envinf2). | 04 October 2021, 09:29:47 UTC |
82a38bd | Lars Bilke | 04 October 2021, 08:33:55 UTC | [ci] Set container cpu-target as a global variable. | 04 October 2021, 09:29:47 UTC |
e377aa0 | Lars Bilke | 04 October 2021, 08:30:39 UTC | [ci] Use container-makers --cpu-target flag. | 04 October 2021, 09:29:47 UTC |