| b2ca0ce | Dmitry Yu. Naumov | 11 June 2021, 05:40:08 UTC | Merge branch 'TH2M_refactorings' into 'master' TH2M refactorings See merge request ogs/ogs!3656 | 11 June 2021, 05:40:08 UTC |
| 3adb271 | Tom Fischer | 11 June 2021, 04:23:36 UTC | Merge branch 'SmallFixes' into 'master' A set of independent small changes. See merge request ogs/ogs!3657 | 11 June 2021, 04:23:36 UTC |
| 3972847 | Dmitri Naumov | 09 June 2021, 09:37:23 UTC | Don't additionally link spdlog in every library. spdlog is linked "public" in BaseLib. Reason is the violation of odr for some globals defined in the spdlog library. ==1540297==ERROR: AddressSanitizer: odr-violation (0x7f5ea9c9d020): [1] size=40 'vtable for spdlog::spdlog_ex' _deps/spdlog-src/src/spdlog.cpp [2] size=40 'vtable for spdlog::spdlog_ex' _deps/spdlog-src/src/spdlog.cpp These globals were registered at these points: [1]: #0 0x5614686e0dfa in __asan_register_globals.part.0 (/home/naumov/w/ogs/d/bin/ogs+0x1bfdfa) #1 0x7f5e6cdbe7eb in asan.module_ctor (/home/naumov/w/ogs/d/bin/../lib/libMeshLib.so+0x17d37eb) [2]: #0 0x558bd62b6dfa in __asan_register_globals.part.0 (/home/naumov/w/ogs/d/bin/ogs+0x1bfdfa) #1 0x7f831c7e54ab in asan.module_ctor (/home/naumov/w/ogs/d/bin/../lib/libBaseLib.so+0x89a4ab) | 09 June 2021, 12:36:34 UTC |
| fa9c332 | Dmitri Naumov | 31 May 2021, 14:36:03 UTC | [BL] Extend error messages for xml patches. | 09 June 2021, 12:36:34 UTC |
| 76a3050 | Thomas Fischer | 02 June 2021, 12:56:03 UTC | [PL/U/LocalDataInitializer] Clang format. | 09 June 2021, 12:36:34 UTC |
| 4159dc2 | Thomas Fischer | 17 May 2021, 08:55:21 UTC | [T/ComponentTransport] Use multiple meshes tag in prj file instead of geometry. | 09 June 2021, 12:36:34 UTC |
| ce3e379 | Dmitri Naumov | 09 June 2021, 10:27:18 UTC | [PL/TH2M] Use dt=0 in initialization. Needed for correct computation of thermal strains and solid material models' updates. | 09 June 2021, 11:55:47 UTC |
| 229f76a | Dmitri Naumov | 08 June 2021, 14:15:03 UTC | [PL/TH2M] Move solid variables update. Stresses and strains are now updated together with all the other constitutive variables. | 09 June 2021, 11:55:47 UTC |
| cb5cdaa | Dmitri Naumov | 08 June 2021, 13:35:35 UTC | [PL/TH2M] Pass xdot to update constitutive vars. | 09 June 2021, 11:55:47 UTC |
| b29d4e1 | Dmitri Naumov | 09 June 2021, 10:15:10 UTC | [PL/TH2M] rm postNonLinearSolverConcreteProcess(). Function is not needed. | 09 June 2021, 11:55:47 UTC |
| 5f6623a | Dmitri Naumov | 08 June 2021, 18:57:27 UTC | [PL/TH2M] Remove unused using type definition. | 09 June 2021, 11:55:47 UTC |
| 19e3e0b | Tom Fischer | 09 June 2021, 11:29:28 UTC | Merge branch 'FixMultipleDeactivatedSubdomainsBug' into 'master' Rewrite update of deactivated subdomains. See merge request ogs/ogs!3654 | 09 June 2021, 11:29:28 UTC |
| ca88a32 | Dmitri Naumov | 28 May 2021, 15:14:33 UTC | [MPL] clang-format; Sort includes. | 09 June 2021, 10:43:51 UTC |
| 1231de9 | Dmitri Naumov | 26 May 2021, 16:01:12 UTC | [ParL] Remove unnecessary data member and typedef. Data member is used only in constructor, no need to store it. | 09 June 2021, 10:43:51 UTC |
| df20643 | Thomas Fischer | 09 June 2021, 05:56:06 UTC | [T/HM] Use multiple meshes instead of geometry. | 09 June 2021, 10:02:59 UTC |
| 9aa8768 | Dmitri Naumov | 07 June 2021, 16:10:00 UTC | [PL/PV] DS; Readd special case for all active elements. Some parts of the code expect an empty set of active elements if all of the elements are active. | 08 June 2021, 09:02:10 UTC |
| ff1d8c3 | Dmitri Naumov | 07 June 2021, 14:12:17 UTC | [T/HM] Excavation niches. Two parallel excavations starting at different times and with different excavation rates. Mainly for testing of the multi material excavation procedures. | 08 June 2021, 09:02:10 UTC |
| 0741131 | Dmitri Naumov | 02 June 2021, 22:04:00 UTC | [PL] Rename deactivated subdomain's function. | 07 June 2021, 14:24:35 UTC |
| 92578a0 | Dmitri Naumov | 02 June 2021, 21:57:25 UTC | [PL] Rewrite update of deactivated subdomains. The previous implementation was looking for one deactivated subdomain, but there could be multiple subdomains inactive at the same time. Now all deactivated subdomains are searched for active/inactive elements. | 07 June 2021, 14:24:35 UTC |
| 15a2ed9 | Dmitry Yu. Naumov | 07 June 2021, 10:16:13 UTC | Merge branch 'Stokes' into 'master' New Process: Stokes flow See merge request ogs/ogs!3617 | 07 June 2021, 10:16:13 UTC |
| 24d8bcc | renchao_lu | 30 May 2021, 16:43:54 UTC | [Docu] add parameter documentation. | 03 June 2021, 17:31:19 UTC |
| 28d0a4e | renchao_lu | 30 May 2021, 16:49:38 UTC | [T] add parallel plate test case. | 03 June 2021, 17:31:19 UTC |
| f77eba8 | renchao_lu | 02 June 2021, 17:08:19 UTC | [PL/Stokes] add local assembler interface. | 03 June 2021, 17:31:19 UTC |
| ca8ac88 | renchao_lu | 02 June 2021, 17:08:03 UTC | [PL/Stokes] add integration point data. | 03 June 2021, 17:31:19 UTC |
| fc99003 | renchao_lu | 30 May 2021, 16:47:29 UTC | [PL/Stokes] add local assembler. | 03 June 2021, 17:31:19 UTC |
| d34f8be | renchao_lu | 30 May 2021, 16:48:14 UTC | [PL/Stokes] add process member functions. | 03 June 2021, 17:31:19 UTC |
| 55b078c | renchao_lu | 30 May 2021, 16:46:36 UTC | [PL/Stokes] add process data. | 03 June 2021, 17:31:19 UTC |
| 3475b54 | renchao_lu | 30 May 2021, 16:45:50 UTC | [PL/Stokes] create Stokes flow process. | 03 June 2021, 17:31:19 UTC |
| 3d3bca7 | renchao_lu | 30 May 2021, 16:45:17 UTC | [CMake] include a Stokes process module. | 03 June 2021, 17:31:19 UTC |
| a43db31 | Dmitry Yu. Naumov | 03 June 2021, 17:08:49 UTC | Merge branch 'RewritePolygonTreeInterfaces' into 'master' Refactor polygon tree interfaces. See merge request ogs/ogs!3634 | 03 June 2021, 17:08:49 UTC |
| 4b12ab4 | Dmitri Naumov | 19 May 2021, 09:21:04 UTC | [GL] Make class members private. Moving them from protected section. All of the access is now through public interface and these parts can be hidden. | 03 June 2021, 16:34:25 UTC |
| 69a7f3a | Dmitri Naumov | 19 May 2021, 09:19:32 UTC | [App/IO] Remove unnecessary if-condition. The following for-loop is not run anyway. | 03 June 2021, 16:34:25 UTC |
| 65b3aff | Thomas Fischer | 19 May 2021, 14:08:23 UTC | [A/IO/Gmsh] Constify methods of GMSHPolygonTree. | 03 June 2021, 16:34:25 UTC |
| f6b03c8 | Dmitri Naumov | 18 May 2021, 21:15:21 UTC | [GL] Use for-range loops. Add iterator IF. | 03 June 2021, 16:34:25 UTC |
| 379b078 | Dmitri Naumov | 18 May 2021, 20:51:09 UTC | [GL] Remove unnecessary set function used once. | 03 June 2021, 16:34:25 UTC |
| c9a92d1 | Dmitri Naumov | 18 May 2021, 19:23:40 UTC | [GL] Unify tree's polygon access. Replacing different two different access types, one through a getPolygon() member function, another through direct data member _node_polygon access. | 03 June 2021, 16:34:25 UTC |
| c97479d | Dmitri Naumov | 18 May 2021, 18:14:32 UTC | [GL] Add parent node access. | 03 June 2021, 16:34:25 UTC |
| 81d347e | Dmitri Naumov | 18 May 2021, 18:02:38 UTC | [GL] Add SimplePolygonTree::isRoot query. | 03 June 2021, 16:34:25 UTC |
| 673f991 | Tom Fischer | 03 June 2021, 15:01:13 UTC | Merge branch 'saturation_dependent_thermal_conductivity' into 'master' [MPL] rename HeatConduction -> ThermalConductivity See merge request ogs/ogs!3651 | 03 June 2021, 15:01:13 UTC |
| bf4e1cd | Jörg Buchwald | 01 June 2021, 13:17:27 UTC | rename HeatConduction -> ThermalConductivity | 03 June 2021, 10:21:49 UTC |
| 334069c | renchao.lu | 03 June 2021, 08:11:42 UTC | Merge branch 'ExchangeReactionsEquil' into 'master' [CL] Exchange reactions feature to ChemistryLib See merge request ogs/ogs!3648 | 03 June 2021, 08:11:42 UTC |
| 8b35b21 | Dmitry Yu. Naumov | 03 June 2021, 08:09:29 UTC | Merge branch 'MFront_Update' into 'master' Updating MCAS UBI models for new MFront version See merge request ogs/ogs!3653 | 03 June 2021, 08:09:29 UTC |
| 1952481 | Jaime Garibay | 27 May 2021, 15:25:38 UTC | [T/docs] Added test and documentation | 03 June 2021, 06:25:00 UTC |
| fb6a558 | Jaime Garibay | 21 May 2021, 14:25:30 UTC | [CL] New feature to enable exchange reactions This feature adds the capability to model exchange reactions using the Phreeqc solver | 03 June 2021, 06:24:29 UTC |
| d49bec2 | Dmitry Yu. Naumov | 02 June 2021, 18:51:38 UTC | Merge branch 'fix_HM' into 'master' Fixed a MFront related bug in HM See merge request ogs/ogs!3652 | 02 June 2021, 18:51:38 UTC |
| 5d64c15 | Dmitry Yu. Naumov | 02 June 2021, 16:03:32 UTC | Merge branch 'rename_prj' into 'master' [THM] rename point heat source project/geometry files See merge request ogs/ogs!3650 | 02 June 2021, 16:03:32 UTC |
| 96974e7 | Jörg Buchwald | 01 June 2021, 12:53:26 UTC | rename point heat source project/geometry files | 02 June 2021, 14:42:51 UTC |
| 2f91ac8 | Wenqing Wang | 02 June 2021, 09:46:00 UTC | [HM/LocalAssembler] Pass C_el to getBulkModulus | 02 June 2021, 14:32:27 UTC |
| a7508d5 | Wenqing Wang | 02 June 2021, 09:45:01 UTC | [HM/IntegrationPointData] Added a member of computeElasticTangentStiffness | 02 June 2021, 14:32:27 UTC |
| 7b69a4a | Dmitry Yu. Naumov | 02 June 2021, 14:28:31 UTC | Merge branch 'TH2M_refactorings' into 'master' TH2M refactorings See merge request ogs/ogs!3649 | 02 June 2021, 14:28:31 UTC |
| c637662 | tnagel | 02 June 2021, 14:27:04 UTC | Changed MCAS UBI versions to new TFEL syntax. | 02 June 2021, 14:27:04 UTC |
| 093a1f8 | Dmitri Naumov | 01 June 2021, 12:38:29 UTC | [T/TH2M] Remove unused MPL properties. | 02 June 2021, 12:47:02 UTC |
| 734fbd8 | Dmitri Naumov | 20 May 2021, 12:01:57 UTC | [PL/TH2M] Remove unused variables. | 02 June 2021, 12:47:02 UTC |
| ec74863 | Dmitri Naumov | 28 April 2021, 21:40:06 UTC | [PL/TH2M/PTM] Pass variables to update function. while rewriting the "get" function. This is the second step to separate behaviour from state. | 02 June 2021, 12:47:02 UTC |
| fb69fff | Dmitri Naumov | 28 April 2021, 20:31:56 UTC | [PL/THM2] Extract constitutive variables. First step to separte the behaviour from state. | 02 June 2021, 12:47:02 UTC |
| aad7e13 | Dmitri Naumov | 28 April 2021, 20:11:52 UTC | [PL/TH2M] Rename PhaseTransitionModel base class. Plural is incorrect, just a model. | 02 June 2021, 12:47:02 UTC |
| 07e920f | Dmitri Naumov | 31 May 2021, 21:02:30 UTC | [PL/TH2M] Introduce types for local matrix/vector. Saves a little bit of typing. | 02 June 2021, 12:47:02 UTC |
| 51806bc | Dmitry Yu. Naumov | 02 June 2021, 12:23:16 UTC | [CL] Add missing <string> include. | 02 June 2021, 12:23:16 UTC |
| f2576d9 | Lars Bilke | 31 May 2021, 06:20:56 UTC | [T] Relax tolerances in Parallel_2D_StaggeredScheme_... ...ComponentTransport_TracerSimulation. | 02 June 2021, 09:26:33 UTC |
| 7090fe6 | Tobias Meisel | 01 June 2021, 13:55:46 UTC | [MeL/IO] : Each XDMF Test has unique output file | 01 June 2021, 21:12:48 UTC |
| fc80391 | Lars Bilke | 01 June 2021, 18:19:50 UTC | Merge branch 'ShpMessage' into 'master' [FileIO] Info on shp-polygons consisting of multiple parts See merge request ogs/ogs!3645 | 01 June 2021, 18:19:50 UTC |
| 7d545b6 | rinkk | 28 May 2021, 15:55:38 UTC | [FileIO] Info on shp-polygons consisting of multiple parts | 01 June 2021, 15:01:58 UTC |
| d7f3e5f | Dmitry Yu. Naumov | 01 June 2021, 12:18:06 UTC | Merge branch 'GeometryToGmshGeoTool' into 'master' Gmsh: Command line tool to create geo-files; fix mem leak See merge request ogs/ogs!3644 | 01 June 2021, 12:18:06 UTC |
| 5babfd7 | Thomas Fischer | 01 June 2021, 08:50:17 UTC | [A/U/MGT] Test geo file creation for homogeneous meshing. | 01 June 2021, 08:50:17 UTC |
| ddafba0 | Thomas Fischer | 31 May 2021, 13:20:23 UTC | [web] Documenting geometryToGmshGeo. | 01 June 2021, 08:33:56 UTC |
| db77fcc | Thomas Fischer | 31 May 2021, 07:23:06 UTC | [A/U/MGT] geometryToGmshGeo: handle multiple geometries. | 01 June 2021, 08:33:56 UTC |
| 715fe79 | Thomas Fischer | 21 May 2021, 11:25:11 UTC | [A/IO/Gmsh] Fix memory leak. The PolygonWithSegmentMarker weren't properly cleaned up. Now, the newly created object are given to the GEOObject manager class that cleans up all data. | 01 June 2021, 08:33:56 UTC |
| 099feba | Thomas Fischer | 21 May 2021, 09:49:58 UTC | [scripts] Enable arguments for tester programm. Credits to Lars. | 01 June 2021, 08:33:56 UTC |
| 27e4d7b | Thomas Fischer | 20 May 2021, 15:36:56 UTC | [A/U/MGT] Test for geometryToGmshGeo tool. | 01 June 2021, 08:33:56 UTC |
| cede488 | Thomas Fischer | 20 May 2021, 08:00:49 UTC | [A/U/MGT] Tool to create Gmsh geo files from gml format. | 01 June 2021, 08:33:56 UTC |
| 42ef040 | Thomas Fischer | 20 May 2021, 07:59:54 UTC | [A/IO/Gmsh] Exit when required data is missing. | 31 May 2021, 04:21:07 UTC |
| e5fbe5f | Thomas Fischer | 19 May 2021, 14:07:31 UTC | [A/IO/Gmsh] Don't cleanup _node_polygon. The node polygon is managed externally. | 31 May 2021, 04:21:07 UTC |
| 760886f | Dmitri Naumov | 28 May 2021, 21:04:45 UTC | [MPL] Pass arguments by const ref. cppcheck. | 29 May 2021, 12:47:50 UTC |
| da6f43c | Lars Bilke | 28 May 2021, 20:33:14 UTC | [ci] Fixed image selection. | 28 May 2021, 20:33:14 UTC |
| bbe23b3 | Dmitry Yu. Naumov | 28 May 2021, 20:15:59 UTC | Merge branch 'MplFunctionProperty' into 'master' MPL Function type property using exprtk. Closes #3153 See merge request ogs/ogs!3640 | 28 May 2021, 20:15:59 UTC |
| 2be63eb | Lars Bilke | 28 May 2021, 18:30:43 UTC | [ci] Archive artifacts on failure too. | 28 May 2021, 18:30:43 UTC |
| 2ee4c6a | Dmitry Yu. Naumov | 28 May 2021, 17:47:14 UTC | Merge branch 'ci-images' into 'master' [ci] Improvements in Docker image selection See merge request ogs/ogs!3635 | 28 May 2021, 17:47:14 UTC |
| 927404a | Lars Bilke | 28 May 2021, 15:45:06 UTC | Merge branch 'BinaryToPVTUConversionTool' into 'master' Tool to convert binary parallel mesh format to PVTU format. See merge request ogs/ogs!3629 | 28 May 2021, 15:45:06 UTC |
| 43f2aac | Dmitri Naumov | 26 May 2021, 16:00:02 UTC | [MPL] Function-type Property using exprtk. A generalized property type for (almost) arbitrary functions. Based on the exprtk library also used in the Function-type parameters. In this initial implementation all *scalar* variables from the variable array passed for the value and derivative evaluation can be used. Return values are either scalar, 2- or 3-vectors, and 2x2- or 3x3 matrices. The evaluation is somewhat slower than the dedicated implementation; in the case of component transport process a bilinear property was replaced by exactly the same function-type property and the total run-time for the ctest has increased by around 6%. | 28 May 2021, 15:20:45 UTC |
| dbcb15f | Dmitri Naumov | 26 May 2021, 09:58:27 UTC | [T/CT] Use Function type property for testing. Replaces the Linear type property with a general function type expression with derivatives. | 28 May 2021, 15:20:45 UTC |
| e41b471 | Thomas Fischer | 27 May 2021, 14:43:14 UTC | [T/Utils/binaryToVTU] Add test for tool. | 28 May 2021, 12:29:24 UTC |
| 8a32473 | Thomas Fischer | 25 May 2021, 06:00:15 UTC | [T/xdmf] Fix spelling. | 28 May 2021, 12:29:24 UTC |
| facacbf | Thomas Fischer | 21 May 2021, 20:00:36 UTC | [A/U/ModelPreparation] Activate tool only if OGS_USE_MPI is set. | 28 May 2021, 12:29:23 UTC |
| 0e1f97a | Thomas Fischer | 19 May 2021, 12:42:20 UTC | [A/U/ModelPrep] Tool that reads mesh from parallel binary format and writes it as pvtu. | 28 May 2021, 12:29:23 UTC |
| e9ed281 | Thomas Fischer | 19 May 2021, 12:40:24 UTC | [MeL/IO] Add file name to info message. | 28 May 2021, 12:19:32 UTC |
| 6ff1690 | Thomas Fischer | 19 May 2021, 12:38:41 UTC | [MeL/IO] Use MPI_COMM_WORLD instead of PETSC_COMM_WORLD. This change makes it possible to use MPI related mesh IO functionality without initializing PETSc. | 28 May 2021, 12:19:32 UTC |
| 1c97e42 | Lars Bilke | 25 May 2021, 07:18:35 UTC | [ci] Streamlined Docker image selection logic. | 28 May 2021, 11:36:18 UTC |
| 18f3516 | Dmitry Yu. Naumov | 28 May 2021, 11:27:26 UTC | Merge branch 'DataExplorerFixWarnings' into 'master' DataExplorer: fix Qt deprecated warnings See merge request ogs/ogs!3643 | 28 May 2021, 11:27:26 UTC |
| bbc4e96 | Dmitry Yu. Naumov | 28 May 2021, 08:37:19 UTC | Merge branch 'ctest-output' into 'master' [ctest] Fixing log output See merge request ogs/ogs!3639 | 28 May 2021, 08:37:19 UTC |
| fda48cd | Thomas Fischer | 28 May 2021, 06:27:13 UTC | [A/DE] Fix Qt warning: 'QFlags' is deprecated. | 28 May 2021, 06:27:13 UTC |
| 232469c | Thomas Fischer | 28 May 2021, 06:26:29 UTC | [A/DE] Fix Qt warning: 'split' is deprecated. | 28 May 2021, 06:26:29 UTC |
| cc050e8 | Tom Fischer | 28 May 2021, 05:14:47 UTC | Merge branch 'DisableNonMPIToolsInMPIBuild' into 'master' Disable building non MPI tools in MPI / PETSc build See merge request ogs/ogs!3638 | 28 May 2021, 05:14:47 UTC |
| f9ea88b | Lars Bilke | 27 May 2021, 13:07:21 UTC | [ci] Cleanup ctest log files for passed tests. | 27 May 2021, 14:04:53 UTC |
| 730335a | Lars Bilke | 26 May 2021, 21:35:35 UTC | [ci] Archive logs. | 27 May 2021, 13:07:17 UTC |
| 9d1d560 | Lars Bilke | 26 May 2021, 21:29:24 UTC | Revert "Use xsltproc to transform ctest error output (win)." This reverts commit 033fa1ec17c611d2fb3dd638b9898cbf26345d64. | 27 May 2021, 13:07:17 UTC |
| 6f6fc4f | Lars Bilke | 26 May 2021, 21:28:34 UTC | Revert "Use xsltproc to transform ctest error output." This reverts commit c3b4e85b26ae14baa6c10e213d00fb00acc210e5. | 27 May 2021, 13:07:17 UTC |
| bef6e6a | Lars Bilke | 26 May 2021, 21:12:49 UTC | [ctest] Log for OgsTest(). | 27 May 2021, 13:07:17 UTC |
| fb4792f | Lars Bilke | 26 May 2021, 20:49:15 UTC | [ctest] Log for MeshTest(). | 27 May 2021, 13:07:16 UTC |
| 741c368 | Lars Bilke | 26 May 2021, 20:44:44 UTC | [ctest] Better output. - ctests added with AddTest() write log files to build-dir/logs/ - when running ctest --output-on-failure: - test wrapper do not output log to console, only log file - test tester output to console as well | 27 May 2021, 13:07:16 UTC |
| 20d18b4 | Lars Bilke | 27 May 2021, 10:17:41 UTC | [cmake] Return early in tools CMakeLists, avoids indentation. | 27 May 2021, 10:17:41 UTC |
