Revision 66357a4654bfe45c5fe4a9565bdf67d7b5a6f05c authored by clevermx on 18 January 2022, 11:09:39 UTC, committed by Space on 18 January 2022, 11:09:39 UTC
Add meta-files generation for new counts processing.
Add support for 8+ versions of ARCHs4.

Co-authored-by: Alexey Sergushichev <alserg@itmo.ru>
Merge-request: PHANTASUS-MR-21
Merged-by: Maksim Kleverov <klevermx@gmail.com>
1 parent d230978
Raw File
loadGEO.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{loadGEO}
\alias{loadGEO}
\title{Load GEO Dataset.}
\usage{
loadGEO(name, type = NA)
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}

\item{type}{Type of the dataset: 'GSE' or 'GDS'. If not specified,
the function will take first three letters
of \code{name} variable as type.}
}
\value{
File with ProtoBuf-serialized ExpressionSet-s
    that were downloaded by this identifier.
    For GSE-datasets there can be multiple annotations, so in file will be a
    list mapping name with GPL to ExpressionSet.
}
\description{
\code{loadGEO} returns the file with serialized ExpressionSet using
    ProtoBuf, parsed from data downloaded from GEO by identifier.
}
\examples{
\dontrun{
    loadGEO("GSE27112")
    loadGEO("GDS4922")
}

}
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