https://github.com/geodynamics/citcoms
Revision c27c7164b00b949f947d5f0129903a294b5ddba7 authored by Michael Gurnis on 29 January 2007, 20:51:24 UTC, committed by Michael Gurnis on 29 January 2007, 20:51:24 UTC
1 parent a60c042
Tip revision: c27c7164b00b949f947d5f0129903a294b5ddba7 authored by Michael Gurnis on 29 January 2007, 20:51:24 UTC
The functionality of this routine is now expanded so that for evey time step the element materials are read in. The code for determining the material file names and opening the file name and then reading in the element files is placed in the same code that the age grids and velocity files are processed. Obviously, reading in materials currently only works for Full; fill be working on Regional next.
The functionality of this routine is now expanded so that for evey time step the element materials are read in. The code for determining the material file names and opening the file name and then reading in the element files is placed in the same code that the age grids and velocity files are processed. Obviously, reading in materials currently only works for Full; fill be working on Regional next.
Tip revision: c27c716
batchcombine.py
#!/usr/bin/env python
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
#<LicenseText>
#
# CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy.
# Copyright (C) 2002-2005, California Institute of Technology.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
#</LicenseText>
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
'''
Paste and combine Citcom data
Usage: batchcombine.py <machinefile | node-list> datadir datafile timestep nodex nodey nodez ncap nprocx nprocy nprocz
'''
def machinefile2nodes(machinefile, totalnodes):
try:
nodelist = file(machinefile).readlines()
except IOError:
nodelist = machinefile.split()
# check the length of nodelist
n = len(nodelist)
if not n == totalnodes:
print 'WARNING: length of machinefile does not match number of processors, try to duplicate machinefile...'
if (totalnodes > n) and ((totalnodes % n) == 0):
# try to match number of processors by duplicating nodelist
nodelist *= (totalnodes / n)
else:
raise ValueError, 'incorrect machinefile size'
# generate a string of machine names
nodes = ''
for node in nodelist:
nodes += '%s ' % node.strip()
return nodes
def combine(nodes, datadir, datafile, timestep, nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz):
import os
# paste
cmd = 'batchpaste.sh %(datadir)s %(datafile)s %(timestep)d %(nodes)s' \
% vars()
print cmd
os.system(cmd)
# combine
cmd = 'combine.py %(datafile)s %(timestep)d %(nodex)d %(nodey)d %(nodez)d %(ncap)d %(nprocx)d %(nprocy)d %(nprocz)d' % vars()
print cmd
os.system(cmd)
# delete
cmd = 'rm %(datafile)s.[0-9]*.%(timestep)d' % vars()
print cmd
os.system(cmd)
# create .general file
cmd = 'dxgeneral.sh %(datafile)s.cap*.%(timestep)d' % vars()
print cmd
os.system(cmd)
return
if __name__ == '__main__':
import sys
if not len(sys.argv) == 12:
print __doc__
sys.exit(1)
machinefile = sys.argv[1]
datadir = sys.argv[2]
datafile = sys.argv[3]
timestep = int(sys.argv[4])
nodex = int(sys.argv[5])
nodey = int(sys.argv[6])
nodez = int(sys.argv[7])
ncap = int(sys.argv[8])
nprocx = int(sys.argv[9])
nprocy = int(sys.argv[10])
nprocz = int(sys.argv[11])
totalnodes = nprocx * nprocy * nprocz * ncap
nodelist = machinefile2nodes(machinefile, totalnodes)
combine(nodelist, datadir, datafile, timestep, nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz)
# version
# $Id$
# End of file
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