https://github.com/ctlab/phantasus
Revision c7f158de501e11f5bdb66601037930cfd80e3fd4 authored by petrovich on 19 July 2018, 21:23:57 UTC, committed by petrovich on 19 July 2018, 23:02:52 UTC
1 parent 0b99be8
Tip revision: c7f158de501e11f5bdb66601037930cfd80e3fd4 authored by petrovich on 19 July 2018, 21:23:57 UTC
Update JS. Rebase fixed
Update JS. Rebase fixed
Tip revision: c7f158d
loadGEO.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{loadGEO}
\alias{loadGEO}
\title{Load GEO Dataset.}
\usage{
loadGEO(name, type = NA)
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}
\item{type}{Type of the dataset: 'GSE' or 'GDS'. If not specified,
the function will take first three letters
of \code{name} variable as type.}
}
\value{
File with ProtoBuf-serialized ExpressionSet-s
that were downloaded by this identifier.
For GSE-datasets there can be multiple annotations, so in file will be a
list mapping name with GPL to ExpressionSet.
}
\description{
\code{loadGEO} returns the file with serialized ExpressionSet using
ProtoBuf, parsed from data downloaded from GEO by identifier.
}
\examples{
\dontrun{
loadGEO("GSE27112")
loadGEO("GDS4922")
}
}
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