https://github.com/splatlab/squeakr
Revision e8b9aa9e66d628d5c751b9c0ad43e2c43e1c2cce authored by Rob Patro on 01 November 2018, 15:16:09 UTC, committed by GitHub on 01 November 2018, 15:16:09 UTC
Change default `part_size`
1 parent 797f838
Tip revision: e8b9aa9e66d628d5c751b9c0ad43e2c43e1c2cce authored by Rob Patro on 01 November 2018, 15:16:09 UTC
Update reader.h
Update reader.h
Tip revision: e8b9aa9
todo.txt
count:
- kill -p [DONE]
- change -o to output file [DONE]
- make -o required [DONE]
- add argument:
<-e | -p num_hash_bits>
query:
- make -o optional (default to stdout)
- make -q optional (default to stdin)
inner_prod:
- remove -a -b [DONE]
list:
- make -o optional (default to stdout)
- add a cutoff parameter
new command: merge
merge <-e | -p num_hash_bits> [-c cutoff] [-n] -o <output.squeakr> <infile1.squeakr> ...
new command: filter
(same as merge, but only one input -- internally just runs merge)
new command: info [DONE]
info <input.squeakr>
- outputs:
- kmer size
- version
- exactness or num hash bits
- number of kmers
- number of distinct kmers
- cutoff
- whether counts are present
- etc?
make squeakrconfig packed [DONE]
Computing file changes ...
