https://github.com/ctlab/phantasus
Revision eec4329a2ac55a1384107ea0a21d0f2b5583abf9 authored by Alexey Sergushichev on 07 July 2018, 12:05:59 UTC, committed by Alexey Sergushichev on 07 July 2018, 12:05:59 UTC
1 parent 7860af3
Tip revision: eec4329a2ac55a1384107ea0a21d0f2b5583abf9 authored by Alexey Sergushichev on 07 July 2018, 12:05:59 UTC
More robust loading from ARCHS4 (no need to provide GPLs)
More robust loading from ARCHS4 (no need to provide GPLs)
Tip revision: eec4329
loadFromARCHS4.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{loadFromARCHS4}
\alias{loadFromARCHS4}
\title{Loads expression data from ARCHS4 count files.
Only sapmles with counted expression are kept.
If es already containts expression data it is returned as is.}
\usage{
loadFromARCHS4(es, archs4_files)
}
\arguments{
\item{es}{ExpressionSet from GEO to check for expression in ARCHS4}
\item{archs4_files}{list of available .h5 files from ARCHS4 project}
}
\value{
either original es or an ExpressionSet with loaded count data from ARCHS4
}
\description{
Loads expression data from ARCHS4 count files.
Only sapmles with counted expression are kept.
If es already containts expression data it is returned as is.
}
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