https://github.com/ctlab/phantasus
Revision f3ef1d1d0b345b08132a9574ddc7ccab361a1ae5 authored by petrovich on 22 August 2019, 13:57:33 UTC, committed by petrovich on 10 September 2019, 17:13:21 UTC
1 parent c6e7a2a
Tip revision: f3ef1d1d0b345b08132a9574ddc7ccab361a1ae5 authored by petrovich on 22 August 2019, 13:57:33 UTC
ARCHS4: metadata population
ARCHS4: metadata population
Tip revision: f3ef1d1
reparseCachedESs.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{reparseCachedESs}
\alias{reparseCachedESs}
\title{Reparse cached expression sets from GEO.}
\usage{
reparseCachedESs(destdir, mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{destdir}{Directory used for caching loaded Series files from GEO database.}
\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
vector of previously cached GSE IDs
}
\description{
The function should be used on phantasus version updates that change
behavior of loading datasets from GEO. It finds all the datasets
that were cached and runs `getES` for them again. The function
uses cached Series and other files from GEO.
}
\examples{
reparseCachedESs(destdir=tempdir())
}
Computing file changes ...
