https://github.com/gantzgraf/vcfhacks
Tip revision: fad2fead99ffa6df9c6347c0193bb0c35ea8ab5f authored by David A. Parry on 19 December 2015, 13:16:39 UTC
add PL and phasing info
add PL and phasing info
Tip revision: fad2fea
File | Mode | Size |
---|---|---|
data | ||
lib | ||
make_binaries | ||
par | ||
unmaintained | ||
vep_plugins | ||
.gitmodules | -rw-r--r-- | 314 bytes |
LICENSE.txt | -rw-r--r-- | 34.3 KB |
annotateSnps.pl | -rwxr-xr-x | 42.2 KB |
annovcfToSimple.pl | -rwxr-xr-x | 37.1 KB |
checkInheritance.pl | -rwxr-xr-x | 13.4 KB |
clinSummarizer.pl | -rwxr-xr-x | 29.1 KB |
countVariants.pl | -rwxr-xr-x | 381 bytes |
countVcfCalls.pl | -rwxr-xr-x | 8.6 KB |
examples.md | -rw-r--r-- | 15.4 KB |
examples.txt | -rw-r--r-- | 13.2 KB |
examples_bin.md | -rw-r--r-- | 15.7 KB |
filterOnEvsMaf.pl | -rwxr-xr-x | 22.0 KB |
filterOnSample.pl | -rwxr-xr-x | 35.5 KB |
filterVcfOnLocation.pl | -rwxr-xr-x | 7.4 KB |
filterVcfOnVcf.pl | -rwxr-xr-x | 53.0 KB |
findBiallelic.pl | -rwxr-xr-x | 76.2 KB |
geneAnnotator.pl | -rwxr-xr-x | 66.3 KB |
getFunctionalVariants.pl | -rwxr-xr-x | 49.5 KB |
getHetVariants.pl | -rwxr-xr-x | 3.3 KB |
getSampleNames.pl | -rwxr-xr-x | 2.7 KB |
getVariantsByLocation.pl | -rwxr-xr-x | 19.2 KB |
gpl.txt | -rw-r--r-- | 34.3 KB |
hgmdMartToVcf.pl | -rwxr-xr-x | 12.6 KB |
rankOnCaddScore.pl | -rwxr-xr-x | 15.6 KB |
readme.md | -rw-r--r-- | 23.1 KB |
removeVariantInfoFields.pl | -rwxr-xr-x | 2.0 KB |
renameSamples.pl | -rwxr-xr-x | 3.6 KB |
sampleCallsToInfo.pl | -rwxr-xr-x | 13.4 KB |
selectSampleCalls.pl | -rwxr-xr-x | 2.8 KB |
sortVcf.pl | -rwxr-xr-x | 3.8 KB |
vcfToSnpViewer.pl | -rwxr-xr-x | 8.4 KB |